Pairwise Alignments

Query, 362 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  100 bits (250), Expect = 7e-26
 Identities = 79/267 (29%), Positives = 131/267 (49%), Gaps = 30/267 (11%)

Query: 4   NSRLKAENEALKQKLLEQQRRYEVEIEELKNMAR-ENEAMQQQSRQNTDLYSDVIACQNQ 62
           NS +   +++L+Q + +         ++L N+A+  ++A   Q ++  ++ +++   Q  
Sbjct: 245 NSLMDTVSDSLQQ-VQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTNITDMQ-- 301

Query: 63  GGEMLNAVRDGIASSAEILTEEKESL-----SELDKIFDQTRVAIVNLGNRATYINKQAT 117
                     G     E  TEE   L     S + +   Q   A  ++ N    I     
Sbjct: 302 ----------GKQQQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIE---- 347

Query: 118 SSMQAVTELNSTTSSINQFVAAIQGISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRQ 177
           +  Q + ELN+ T  ++  +  I+GI+EQTNLLALNAAIEAARAGE GRGFAVVADEVR 
Sbjct: 348 AVKQRIVELNNQTGQVSSILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRH 407

Query: 178 LASKAHEASSQIEKLVK--QIVTQAS-----NIKEIVHNNQNSALDVASSSTQIGQVVED 230
           LAS+  EA+  IE ++   Q  +QAS      +    H   +   +++++ T++   ++ 
Sbjct: 408 LASRTTEATGNIENIIAGFQRDSQASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEMQQ 467

Query: 231 VLQRSNNMQQVIHNAATASFLNTTKLD 257
           VL  +  +Q+        S     K+D
Sbjct: 468 VLSHAMGIQEQTKRTTEVSHEIQNKVD 494