Pairwise Alignments

Query, 362 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 482 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score = 97.4 bits (241), Expect = 7e-25
 Identities = 60/180 (33%), Positives = 98/180 (54%), Gaps = 8/180 (4%)

Query: 33  KNMARENEAMQQQSRQNTDLYSDVIACQNQGGEMLNAVRDGIASSAEILTEEKESLSELD 92
           + +A  ++    Q++QN +L       Q+Q  + +    D + ++ E ++    + S+  
Sbjct: 211 RTLANASDEFNLQAKQNDELAQ----FQHQFLDTVAVAMDQMTAAIEEVSHNAANTSDHT 266

Query: 93  K----IFDQTRVAIVNLGNRATYINKQATSSMQAVTELNSTTSSINQFVAAIQGISEQTN 148
           K        ++  I     R   +  Q  ++  AV +L+   + I   V  I GISEQTN
Sbjct: 267 KHNATAAADSKQRIAEAVRRIGQLTGQIDAASSAVDQLSGNATEIGAVVTTINGISEQTN 326

Query: 149 LLALNAAIEAARAGEAGRGFAVVADEVRQLASKAHEASSQIEKLVKQIVTQASNIKEIVH 208
           LLALNAAIEAARAGE GRGFAVVADEVR LA +  +A+ +I+ +++ + + +  + +I H
Sbjct: 327 LLALNAAIEAARAGEQGRGFAVVADEVRTLAGRTQQATVEIQSMIEGLQSGSGQLADITH 386



 Score = 31.2 bits (69), Expect = 6e-05
 Identities = 47/226 (20%), Positives = 87/226 (38%), Gaps = 27/226 (11%)

Query: 29  IEELK-NMARENEAMQQQSRQNTDLYSDVIACQNQGGEMLNAVRDGIASSAEIL----TE 83
           IEE+  N A  ++  +  +    D    +     + G++   + D  +S+ + L    TE
Sbjct: 252 IEEVSHNAANTSDHTKHNATAAADSKQRIAEAVRRIGQLTGQI-DAASSAVDQLSGNATE 310

Query: 84  EKESLSELDKIFDQTRVAIVNLGNRATYINKQATSSMQAVTELNSTTSSINQFVAAIQ-- 141
               ++ ++ I +QT +  +N    A    +Q         E+ +      Q    IQ  
Sbjct: 311 IGAVVTTINGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAGRTQQATVEIQSM 370

Query: 142 --GISEQTNLLA--LNAAIEAARAGEA-----GRGFAVVADEV-------RQLASKAHEA 185
             G+   +  LA   +  +E A  G A     G     +AD +        Q+A+ A E 
Sbjct: 371 IEGLQSGSGQLADITHEIVEQAELGRAAIESVGSDVDTMADSIDQVFDMSSQIAASAEEQ 430

Query: 186 SSQIEKLVKQ---IVTQASNIKEIVHNNQNSALDVASSSTQIGQVV 228
           S     +  Q   I  Q+  IKE    +   A ++  SST++  ++
Sbjct: 431 SVSARDIASQLNEIRDQSQTIKETAERSVVLASELQQSSTELDGIL 476