Pairwise Alignments

Query, 255 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 243 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 53.5 bits (127), Expect = 4e-12
 Identities = 61/241 (25%), Positives = 96/241 (39%), Gaps = 11/241 (4%)

Query: 1   MKFFTHLVIVVFLSSIPLTAQATLNIYTEEWAPISFSVDGKPDGLAVQVVQEIQKRIDNQ 60
           MK    L+ VV L S    AQ T+    + W P     + +  GL+V +V          
Sbjct: 2   MKSIATLISVV-LCSFSAWAQ-TITAAQDPWPPFVME-NAQQKGLSVDIVTAAFATQGYT 58

Query: 61  DPIKVVPWARGWKIITEQPNTVLFTMTRTAERERMFSLIGPVAVGTTNFYALKNSNLKIN 120
               ++PW+R    + E    +L     T ER    +           F      N +  
Sbjct: 59  VEFTIMPWSRALNDVKEGKIDILPATWFTQERTAYLTYSDNYLTNQVKFIKKAGDNFEFA 118

Query: 121 SIEDAKQAKAIGVYRS-SVEEQLLIEHRFSNIAPSSTPLLSAKQLIKQ-RIDLWCNANLT 178
            +      K +G+ R     ++ + +  F    P ST L    Q ++  RIDL     L 
Sbjct: 119 GLASLN-GKKVGIVRGYGYGDEFMNDPSF--FRPESTDLKQNLQKLQAGRIDLAVEDELV 175

Query: 179 APSILAEAGASMDDVK-SLYTISANHLYIAFSQGTPSEE--VDKWKQALISIKADGTFAQ 235
           A SI+ EAG ++ D   +   IS N L++   +  P  E  V  + + L  IKA+GTF +
Sbjct: 176 AKSIITEAGMNLADFAFTNQAISENPLHVTSGKANPRSEELVAAFNKGLAEIKANGTFDK 235

Query: 236 I 236
           +
Sbjct: 236 L 236