Pairwise Alignments

Query, 255 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 250 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis S2

 Score = 46.6 bits (109), Expect = 5e-10
 Identities = 49/216 (22%), Positives = 98/216 (45%), Gaps = 16/216 (7%)

Query: 32  APISFSVDGKPDGLAVQVVQEIQKRIDNQDPIKVVPWARGWKIITE-QPNTVLFTMTRTA 90
           AP S+  DG+  G  V+++ EI KR+D Q    V  ++     ++E + +  +  + +T 
Sbjct: 41  APTSYIEDGEFKGFEVELIYEISKRLDLQPEFVVYSFSELLDAVSEGEVDCGIGYIGKTP 100

Query: 91  ERERMFSLIGPVAVGTTNFYALKNSN-LKINSIEDAKQAKAIGVYRSSVE----EQLLIE 145
           ER+       P     +      +SN + I  +E+    K++GV + S+E    E LL  
Sbjct: 101 ERQLKMDFSRPYGYTYSTILVRSDSNCVGIKCLEN----KSVGVLKDSIEEYWLESLLKS 156

Query: 146 HRFSNIAPSSTPLLSAKQLIKQRIDLWCNANLTAPSILAEAGASMDDVKSLYTISANHLY 205
             F  I   +   ++   L+  +ID     ++T+  ++ +    +  V   + I    +Y
Sbjct: 157 MDFKIIIYENQNDIN-NDLLSGKIDSEVTDHITSLYLIQDYDTELKIVGDKFDI----IY 211

Query: 206 IAFSQGTPSEEVDK-WKQALISIKADGTFAQIYRRW 240
           +A +    + E+ K    AL+ ++ DGT  ++  +W
Sbjct: 212 VAIAIDNTNPELKKSIDVALLEMENDGTLVKLKEKW 247