Pairwise Alignments

Query, 1074 a.a., carbamoyl-phosphate synthase, large subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1119 a.a., carbamoyl-phosphate synthase large chain from Phaeobacter inhibens DSM 17395

 Score = 1259 bits (3258), Expect = 0.0
 Identities = 675/1123 (60%), Positives = 810/1123 (72%), Gaps = 63/1123 (5%)

Query: 1    MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
            MPKRTDI+SI+I+GAGPI+IGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDP +
Sbjct: 1    MPKRTDIQSIMIIGAGPIIIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPGL 60

Query: 61   ADATYIEPIQWEVVRNIIAKERPDAILPTMGGQTALNCALELEAKGVLAEFNVEMIGATA 120
            ADATYIEPI  EVV  II KERPDA+LPTMGGQT LN AL LE  GVLA+F+VEMIGA  
Sbjct: 61   ADATYIEPITPEVVAKIIEKERPDALLPTMGGQTGLNTALALEEMGVLAKFDVEMIGAKR 120

Query: 121  DAIDKAEDRSRFDKAMKSIGLECPRAGIAHS-------------MEEAYGVLEQVGFPCI 167
            +AI+ AEDR  F +AM  +GLE PRA I  +             ++ A   LE +G P I
Sbjct: 121  EAIEMAEDRKLFREAMDRLGLENPRATIITAPKKDNGNADLDAGVQMALDELEDIGLPAI 180

Query: 168  IRPSFTMGGSGGGIAYNKEEFEEICSQGLDLSPTKELLIDESLIGWKEYEMEVVRDRNDN 227
            IRP+FT+GG+GGG+AYN+E++   C  G+D SP  ++L+DESL+GWKEYEMEVVRD  DN
Sbjct: 181  IRPAFTLGGTGGGVAYNREDYIHFCRSGMDASPVNQILVDESLLGWKEYEMEVVRDTADN 240

Query: 228  CIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFG 287
             IIVCSIEN DPMGVHTGDSITVAPA TLTDKEYQ+MR+AS+AVLREIGVETGGSNVQ+ 
Sbjct: 241  AIIVCSIENIDPMGVHTGDSITVAPALTLTDKEYQMMRSASIAVLREIGVETGGSNVQWA 300

Query: 288  INPKDGRMVIIEMNPRVSRSSALASKATGFPIAKIAAKLAVGFTLDELMNDITGGRTPAS 347
            +NP DGRMV+IEMNPRVSRSSALASKATGFPIAKIAAKLAVGFTLDEL NDIT G TPAS
Sbjct: 301  VNPADGRMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGFTLDELDNDIT-GVTPAS 359

Query: 348  FEPAIDYVVTKVPRFNFEKFAGSNDRLTTQMKSVGEVMAIGRTFQESLQKALRGLEVNRH 407
            FEP IDYVVTK+PRF FEKFAGS   LTT MKSVGE MAIGRT  ESLQKAL  +E    
Sbjct: 360  FEPTIDYVVTKIPRFAFEKFAGSEPYLTTAMKSVGETMAIGRTIHESLQKALASMETGLT 419

Query: 408  GLDPIT---DMSKPEAMARIRLELKEPGCDRIWYIADAMRAGLTLDEIFRLTNIDPWFLV 464
            G D +       + +  A +   + +   DR+  IA AMR GL+ D+I  +T  DPWFL 
Sbjct: 420  GFDEVAIPGAEDETDGKAAVIKAISQQTPDRMRTIAQAMRHGLSDDDIHAVTKFDPWFLA 479

Query: 465  QIEELIKLEGQVAEAGLAGLNEELLRKLKRKGFADARLAVVLGVNESEVRKLRDRFDIHP 524
            +I E+++ E ++   GL   +E  LR +K  GF DARLA++    E ++R  R    ++ 
Sbjct: 480  RIREIVEAEAKIRAEGLP-QDEHGLRAIKMLGFTDARLAMLTDQREGDIRAARRALGVNA 538

Query: 525  VYKRVDTCAAEFATDTAYMYSTYEE------ECEANPSNRDKIMVLGGGPNRIGQGIEFD 578
            V+KR+DTCAAEF   T YMYSTYE       ECEA PS++ K+++LGGGPNRIGQGIEFD
Sbjct: 539  VFKRIDTCAAEFEAQTPYMYSTYEAPAFGDVECEARPSDKKKVVILGGGPNRIGQGIEFD 598

Query: 579  YCCVHAALALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPK--- 635
            YCC HA  AL + GYETIM+NCNPETVSTDYDTSDRLYFEP+T E V+EI+  E      
Sbjct: 599  YCCCHACFALTDAGYETIMINCNPETVSTDYDTSDRLYFEPLTFEHVMEILTKELENGTL 658

Query: 636  -GVIVQYGGQTPLKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTV 694
             GVIVQ+GGQTPLKLA ALE  G+PI+GTSPDAID AEDRERFQ  + +L +KQP N   
Sbjct: 659  HGVIVQFGGQTPLKLANALEEEGIPILGTSPDAIDLAEDRERFQALVNQLGLKQPHNGIA 718

Query: 695  TTVEGAVIAAERIGYPLVVRPSYVLGGRAMEIVYDQQDLLRYFNEAVSVSNASPVLLDHF 754
            +T   A+  AE IG+PLV+RPSYVLGGRAMEIV D   L RY  EAV VS  SPVLLD +
Sbjct: 719  STDAQALEIAEEIGFPLVIRPSYVLGGRAMEIVRDMDQLKRYIAEAVVVSGDSPVLLDSY 778

Query: 755  LDDAIEVDIDAVCDGETVVIGAIMEHIEQAGVHSGDSGCSLPPYTLSQEIQDRMRVQVGK 814
            L  A+E+D+DA+CDG  V +  IM+HIE+AGVHSGDS CSLPPY+LS+E+   ++ Q   
Sbjct: 779  LSGAVELDVDAICDGTEVHVAGIMQHIEEAGVHSGDSACSLPPYSLSKEVIAEVKTQTNA 838

Query: 815  LAMELGVVGLMNVQFAVK-----NNEIYMIEVNPRAARTVPFVSKATGVPLAKIAARVMA 869
            LA  L VVGLMN+QFAVK      + IY+IEVNPRA+RTVPFV+K+T   +A IAARVMA
Sbjct: 839  LAKALNVVGLMNIQFAVKPDADGKDVIYLIEVNPRASRTVPFVAKSTDSAIASIAARVMA 898

Query: 870  GQSLKAQNFTQEV-----------IP------------PFYSVKEVVLPFNKFPGVDPLL 906
            G+ L   NF +             +P            P++SVKE VLPF +FPGVD LL
Sbjct: 899  GEPL--SNFPKRAPYEPDAGYDVNVPMADPMTLADPDMPWFSVKEAVLPFARFPGVDTLL 956

Query: 907  GPEMRSTGEVMGVGDTFAEAYAKAQLGATSEVPKSGRALLSVRNSDK-KRVADLAAKLIE 965
            GPEMRSTGEVMG   +FA A+ KAQ+GA   +P  GRA +S++++DK   + D A  L+E
Sbjct: 957  GPEMRSTGEVMGWDRSFARAFLKAQMGAGMVLPSEGRAFISIKDADKGTLMLDAAKILVE 1016

Query: 966  LGYQIDATHGTAVILGEAGINPRLVNKVHEGRPHILDRIKNGEYTYIVNTTEGRQAIEDS 1025
             G+ + AT GT   L   G+   LVNKV+EGRPH++D +K+G    ++NTTEG QA++DS
Sbjct: 1017 QGFTLVATRGTQSWLDGHGVPCELVNKVYEGRPHVVDMLKDGNVQLLMNTTEGAQAVQDS 1076

Query: 1026 RQLRRGALRYKVNYTTT---MNAAFATCMAHAADDRTNVTSVQ 1065
            + +R  AL  K+ Y TT    NAA     A A  D   V S+Q
Sbjct: 1077 KDMRSVALYDKIPYFTTAAGANAAARAIKAQAEGD-VEVKSLQ 1118