Pairwise Alignments

Query, 1074 a.a., carbamoyl-phosphate synthase, large subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1081 a.a., carbamoyl-phosphate synthase large subunit from Methanococcus maripaludis S2

 Score = 1069 bits (2764), Expect = 0.0
 Identities = 552/1082 (51%), Positives = 757/1082 (69%), Gaps = 21/1082 (1%)

Query: 3    KRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMAD 62
            KR DIK ++ILG+GPIVIGQA EFD+SG+QACK+L+EEG   ILVNSNPATI TD  +AD
Sbjct: 2    KREDIKKVMILGSGPIVIGQAAEFDFSGSQACKSLKEEGIYTILVNSNPATIQTDTNIAD 61

Query: 63   ATYIEPIQWEVVRNIIAKERPDAILPTMGGQTALNCALELEAKGVLAEFNVEMIGATADA 122
              Y+EP+  +++  II KE+PDAILPTMGGQT LN A+EL  +G+L +  VE++G+T   
Sbjct: 62   KVYLEPLNPKILEKIIEKEQPDAILPTMGGQTGLNLAMELSKRGILEKHGVELLGSTESV 121

Query: 123  IDKAEDRSRFDKAMKSIGLECPRAGIAHSMEEAYGVLEQVGFPCIIRPSFTMGGSGGGIA 182
            I+ +EDR  F+KAM+ I     ++   HS+EEA G  +++G+P I+RP+FT+GG+GGGIA
Sbjct: 122  IETSEDRDLFNKAMEEINQPIAKSAAVHSVEEAIGATKELGYPAIVRPAFTLGGTGGGIA 181

Query: 183  YNKEEFEEICSQGLDLSPTKELLIDESLIGWKEYEMEVVRDRNDNCIIVCSIENFDPMGV 242
             N+EE  EI  +GL  S  K++LID+SL+GWKEYE EV+RD+ND CI+VC++EN DPMG+
Sbjct: 182  NNEEELIEITKKGLKYSMIKQVLIDQSLLGWKEYEYEVMRDKNDTCIVVCNMENIDPMGI 241

Query: 243  HTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302
            HTG+SI  AP+QTL+D+ +Q +R+AS+ ++R + +E GG NVQF +NP+    V+IE+NP
Sbjct: 242  HTGESIVTAPSQTLSDEFHQKLRDASLQIIRHLKIE-GGCNVQFAVNPEMTDYVVIEVNP 300

Query: 303  RVSRSSALASKATGFPIAKIAAKLAVGFTLDELMNDITGGRTPASFEPAIDYVVTKVPRF 362
            RVSRSSALASKATG+PIAKIAAK+A+G TLDE+ ND+T   TPASFEP IDYVV K+PR+
Sbjct: 301  RVSRSSALASKATGYPIAKIAAKIAIGRTLDEIQNDVTK-ETPASFEPTIDYVVVKIPRW 359

Query: 363  NFEKFAGSNDRLTTQMKSVGEVMAIGRTFQESLQKALRGLEVNRHGLDPITDMSKPEAMA 422
             F+KF   + +L T MKS GE+MAIGR  +E+LQKA+R L++ R G+  I D    E   
Sbjct: 360  PFDKFRTVDKKLGTSMKSTGEIMAIGRNLEEALQKAVRSLDIGRFGI--IADGKDKEYSN 417

Query: 423  RIRLELKEPGCD-RIWYIADAMRAGLTLDEIFRLTNIDPWFLVQIEELIKLEGQVAEAGL 481
               +++ E   D R++ IA A+  G ++D I   T I+P+F+ +I+++I  + ++     
Sbjct: 418  SEIVDILEHATDERLFVIAYALDKGWSVDGICERTGINPFFIEKIKKIIDCKKELEVISR 477

Query: 482  AGLNEELLR----KLKRKGFADARLAVVLGVNESEVRKLRDRFDIHPVYKRVDTCAAEFA 537
              +++E L+    K K  GF+D +++ +    E+E+R LR R ++ PVYK VDTCAAEF 
Sbjct: 478  IPVDDEKLKEILLKAKSLGFSDVQISKIFSKTENEIRDLRKRLEVIPVYKMVDTCAAEFE 537

Query: 538  TDTAYMYSTYE-----EECEANPSNRDKIMVLGGGPNRIGQGIEFDYCCVHAALALREDG 592
              T Y YS YE     E+ E+  S+R K+++LG GP RIGQG+EFDY  VHA  AL+E G
Sbjct: 538  AKTPYYYSAYERYFDEEQNESVSSDRKKVIILGSGPIRIGQGVEFDYSTVHAIFALKELG 597

Query: 593  YETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKG----VIVQYGGQTPLK 648
             E I+VN NPETVSTDYDTSD+LYFEP+  E+++ I+  E   G    VIVQ+GGQT + 
Sbjct: 598  IEAIIVNNNPETVSTDYDTSDKLYFEPLVYEEIMNIIENENKNGQLLGVIVQFGGQTAIN 657

Query: 649  LARALEAAGVPIIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTVTTVEGAVIAAERIG 708
            LA  L  +GV I+GTSP +ID AEDR++F   +++L++ Q +  T  + E A+   ERIG
Sbjct: 658  LAMKLYNSGVNILGTSPQSIDLAEDRDQFIHVLEKLKIPQADGATAFSEEQALKVVERIG 717

Query: 709  YPLVVRPSYVLGGRAMEIVYDQQDLLRYFNEAVSVSNASPVLLDHFLDDAIEVDIDAVCD 768
            YP +VRPSYVLGGRAM+IVY+ +DL  Y  EAV VS+  P+L+D FL++A+EVD+DAVCD
Sbjct: 718  YPALVRPSYVLGGRAMQIVYNTEDLKDYMREAVKVSSDHPILIDKFLEEAVEVDVDAVCD 777

Query: 769  GETVVIGAIMEHIEQAGVHSGDSGCSLPPYTLSQEIQDRMRVQVGKLAMELGVVGLMNVQ 828
            GE+V IGAIMEHIE+AG+HSGDS C +PP TLS+E+ +++     KLA+ELGV+GL+N+Q
Sbjct: 778  GESVFIGAIMEHIEEAGIHSGDSACVIPPQTLSKEVIEKIAEHTTKLALELGVIGLLNIQ 837

Query: 829  FAVKNNEIYMIEVNPRAARTVPFVSKATGVPLAKIAARVMAGQSLKAQNFTQEVIPPFYS 888
            +AVK+  +Y+IE NPRA+RT+P+VSK+ GVPLAKIA   + G+ LK   +       + S
Sbjct: 838  YAVKDGVVYIIEANPRASRTIPYVSKSVGVPLAKIATNAIMGKKLKEMGYFGLAKSKYVS 897

Query: 889  VKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGDTFAEAYAKAQLGATSEVPKSGRALLSV 948
            VKE V PF K PGVDP+L PEM+STGE +G+   F +A+ K+QL A  E+P SG   +SV
Sbjct: 898  VKEAVFPFLKLPGVDPVLSPEMKSTGEAIGIDQDFGKAFYKSQLSANMELPTSGTVFISV 957

Query: 949  RNSDKKRVADLAAKLIELGYQIDATHGTAVILGEAGINPRLVNKVHEGRPH-ILDRIKNG 1007
            RN DK  +  +A K   LG++I AT GTA  L    I  R V K+ E   + +LD ++ G
Sbjct: 958  RNRDKDNITKIAKKYHNLGFEIVATRGTARELRLFDIPVREVRKISESMQNSVLDLMQKG 1017

Query: 1008 EYTYIVNTTEGRQAIEDSRQLRRGALRYKVNYTTTMNAAFATCMAHAA--DDRTNVTSVQ 1065
            E   I+NT+ G +A  D   +RR A+   +   TT+  A+A   A  A       V S+ 
Sbjct: 1018 EVDLIINTSSGDKAKTDGYFIRRAAVELNIPCMTTLQGAYAAIKAIEAIKSGELGVYSLN 1077

Query: 1066 EL 1067
            EL
Sbjct: 1078 EL 1079