Pairwise Alignments

Query, 447 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

 Score =  281 bits (718), Expect = 5e-80
 Identities = 168/395 (42%), Positives = 235/395 (59%), Gaps = 7/395 (1%)

Query: 17  LTFAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLL 75
           ++FA LGL+ AL  A+       PT VQQ AIPA+L GRDL+  +QTG+GKT  F LP+L
Sbjct: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 76  QILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCG 135
           + L+       + +  P  +P  LVL PTRELA QV E+    A  L   +      + G
Sbjct: 61  ERLFPNGHPDKSQRHGPR-QPRVLVLTPTRELAAQVHESFKVYARDLKFVSAC----IFG 115

Query: 136 GVALEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQ 195
           GV +  Q+  +S    ++VA PGRLLDL  Q  + L  ++ LVLDEADR+L+MGF  D++
Sbjct: 116 GVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVK 175

Query: 196 KLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQLYLVNKG 255
           K++A +P ++Q LLFSAT  + +  LAGKLL N P ++E +  N  V  IE++++ +   
Sbjct: 176 KVLARLPAKRQNLLFSATFSKDITDLAGKLLHN-PERIEVTPPNTTVERIEQRVFRLPAS 234

Query: 256 SKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLAD 315
            K   L  L+    W QVLVF   +  A+ +A+ L K G+ A A+HG K Q  R++ LAD
Sbjct: 235 HKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALAD 294

Query: 316 FKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVC 375
           FKA  +++LVATD+ ARG+ +D LP V+N +LP     YVHRIGRT RAG  G AISLV 
Sbjct: 295 FKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVA 354

Query: 376 HGEMPNLTAIRNLTARALPLVFLADFPVTDKPSEK 410
             E   L +I  +T + +    L  F  +   +EK
Sbjct: 355 PDEEKLLKSIERMTKQKIADGDLMGFDASTIEAEK 389