Pairwise Alignments

Query, 447 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 605 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  297 bits (760), Expect = 7e-85
 Identities = 180/430 (41%), Positives = 254/430 (59%), Gaps = 13/430 (3%)

Query: 17  LTFAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLL 75
           ++FA LGL+ AL  A+       PT VQQ AIPA+L GRDL+  +QTG+GKT  F LP+L
Sbjct: 1   MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 76  QILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCG 135
           ++L+         +  P  +P  LVL PTRELA QV E+    A  L    PL    + G
Sbjct: 61  ELLFPGGHPDREHRYGPK-QPRVLVLTPTRELAAQVHESFKVYARDL----PLKSTCIFG 115

Query: 136 GVALEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQ 195
           GV +  Q+  ++    ++VA PGRLLDL  Q  I L  ++ LVLDEADR+L+MGF  D++
Sbjct: 116 GVGMNPQIQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVK 175

Query: 196 KLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQLYLVNKG 255
           K++A +P ++Q LLFSAT  + +  LAGKLL N P ++E +  N  V  IE++++ V   
Sbjct: 176 KVLAKLPAKRQNLLFSATFSKDITDLAGKLLHN-PERIEVTPPNTTVERIEQRMFRVAAS 234

Query: 256 SKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLAD 315
            K   L  L+ Q  W QVLVF   +  A+ +A+ L K G+ AAA+HG K Q  R++ LAD
Sbjct: 235 HKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALAD 294

Query: 316 FKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVC 375
           FKA+++++LVATD+ ARG+ +D LP V+N +LP     YVHRIGRT RAG  G AISLV 
Sbjct: 295 FKANQVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVA 354

Query: 376 HGEMPNLTAIRNLTARALPLVFLADFPVTDKPSEKIIDGAENKVIPKRPPRDKQANRRSI 435
             E   L  I  +T + +P   L  F  +       I+  + +V   R PR ++   ++ 
Sbjct: 355 PDEEKLLKGIERMTKQRIPEGDLMGFDAS------AIEAEKPEVREPRQPRPQRGEGKAR 408

Query: 436 NKHSVKAFKG 445
            + +  A KG
Sbjct: 409 GERNKPAEKG 418