Pairwise Alignments

Query, 447 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  239 bits (611), Expect = 2e-67
 Identities = 148/395 (37%), Positives = 219/395 (55%), Gaps = 19/395 (4%)

Query: 16  SLTFAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPL 74
           ++ F++L LN+A+  AL       PT +Q  AIP +L GRD L  +QTG+GKT AF LPL
Sbjct: 25  AIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPL 84

Query: 75  LQILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLC 134
           L  L           ++   KP A+V+ PTRELA+QV+  +  L   +     L I    
Sbjct: 85  LNKL-----------NLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIY--- 130

Query: 135 GGVALEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDM 194
           GG ++  Q+  L +   +VV TPGR+ DL T+  + LD     +LDEAD +L+MGF  D+
Sbjct: 131 GGASILDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDV 190

Query: 195 QKLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQLYLVNK 254
             +M   P+  Q +LFSAT+P  +  +  + L N P  V+ +  N  V ++E+Q ++V  
Sbjct: 191 TWIMEQAPESAQRVLFSATMPPMVKEIVERFLRN-PECVDVAGSNQTVAKVEQQYWVVKG 249

Query: 255 GSKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLA 314
             K +A+  LL+  +    +VF+  R D + +A  L   G  AAALHG+  Q++R +T+ 
Sbjct: 250 VEKDEAMARLLETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVD 309

Query: 315 DFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLV 374
             K   I +LVATD++ARG+ V  +  V N D+P     Y+HRIGRT RAG KG AI LV
Sbjct: 310 HIKQGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLV 369

Query: 375 CHGEMPNLTAIRNLTARALPLVFLADFPVTDKPSE 409
              ++  L  I  +T  ++  + L   P  DK +E
Sbjct: 370 RTNQIRMLRTIERVTRSSMEEIQL---PHRDKVAE 401