Pairwise Alignments

Query, 447 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  287 bits (734), Expect = 5e-82
 Identities = 172/433 (39%), Positives = 257/433 (59%), Gaps = 18/433 (4%)

Query: 16  SLTFAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPL 74
           S+TF++LGL++ L   L    + +PT +QQ AIP +L G+D+LA +QTG+GKT AFGLPL
Sbjct: 5   SITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPL 64

Query: 75  LQILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLC 134
           +Q    +   Q   +   + +  ALVLVPTRELA QV ++L A A        L I  + 
Sbjct: 65  IQ----RFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAK----GTELKIVAVY 116

Query: 135 GGVALEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDM 194
           GG +++ QL  L     +++ATPGRLLD      + L  ++ LVLDEADR+L+MGF PD+
Sbjct: 117 GGTSMKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDL 176

Query: 195 QKLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQLYLVNK 254
           Q+++  +   +QTL FSAT    + ++A +++  DP++V+ +  N+    +++ +Y V+K
Sbjct: 177 QRVLRRLSPLRQTLFFSATFDSKIKAVAYRIM-RDPIEVQVTPSNSTAETVQQMVYPVDK 235

Query: 255 GSKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLA 314
             K + L  L+    W QVLVF   R  +DA+A+ L   GI A +++G+K Q  R + L 
Sbjct: 236 KRKRELLSYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALD 295

Query: 315 DFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLV 374
           DFKA +++ L+ATD+ ARG+ +  L  V+N D+P  A  YVHRIGRT RAG  GLA+SL+
Sbjct: 296 DFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLL 355

Query: 375 CHGEMPNLTAIRNLTARALPLVFLADFPVTDKPSEKIIDGAENKVIPKRPPRDKQANRRS 434
            H E P L AI  L    LP  +L  F    +PS  + +  EN   P+R        R+ 
Sbjct: 356 SHDEQPQLEAIERLLNTRLPQEWLKGF----EPSPVVHE--ENS--PRRSAGRSSEKRKL 407

Query: 435 INKHSVKAFKGKR 447
             +  + A +GK+
Sbjct: 408 KAQLKIHAQRGKK 420