Pairwise Alignments

Query, 447 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  247 bits (631), Expect = 4e-70
 Identities = 155/372 (41%), Positives = 215/372 (57%), Gaps = 13/372 (3%)

Query: 17  LTFAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLL 75
           ++F++LGL+  L + +     + PT +Q  AIP IL GRDL+A +QTG+GKT +F LP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 76  QILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCG 135
           + L Q    QT  K     +  AL+LVPTRELA+QV+E +     Q      L    + G
Sbjct: 61  EKLRQG---QTQRKK----RVRALILVPTRELAMQVAEKVE----QYGKDTGLKSLAVFG 109

Query: 136 GVALEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQ 195
           GV  + Q   L     ++VATPGRL+DL  Q  +  + I+ +VLDEADR+L+MGF   + 
Sbjct: 110 GVDEQAQKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESIN 169

Query: 196 KLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQLYLVNKG 255
           K++  +P   Q LLFSATL   +  LA K    DP ++  +   A    I + L  V+K 
Sbjct: 170 KIIDCLPSEVQFLLFSATLSRKVRELA-KTAVRDPHEISIAANQASKSNISQWLITVDKD 228

Query: 256 SKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLAD 315
           +K+  L  L+ + QW Q L+FI  +  A  +  +L K GI+A A H  + Q +R+Q L D
Sbjct: 229 TKSALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLED 288

Query: 316 FKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVC 375
           FK+ +I+ LVAT + ARGI +D L  V+N DLP  A  YVHRIGRT RA A G AIS V 
Sbjct: 289 FKSGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVS 348

Query: 376 HGEMPNLTAIRN 387
                NL  I +
Sbjct: 349 KDNFKNLCMIES 360