Pairwise Alignments

Query, 447 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 578 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  301 bits (772), Expect = 3e-86
 Identities = 182/433 (42%), Positives = 260/433 (60%), Gaps = 19/433 (4%)

Query: 17  LTFAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLL 75
           ++F+ LGL+A ++KA+  +    P+ +Q  AIPA+L G+D++A +QTG+GKT  F LPLL
Sbjct: 1   MSFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 76  QILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCG 135
           ++L       +      A +  ALVL PTRELA QVSE++      L    PL   ++ G
Sbjct: 61  ELL-------SKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYL----PLRSAVVFG 109

Query: 136 GVALEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQ 195
           GV +  Q+  L     ++VATPGRLLDL  Q  +  + ++ LVLDEADR+L+MGF  D++
Sbjct: 110 GVPINPQIQKLRHGVDVLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIK 169

Query: 196 KLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQLYLVNKG 255
           K++AM+P ++Q L+FSAT  + +  LA K L N P+++  + RNA    +++ +  V+K 
Sbjct: 170 KILAMLPAKRQNLMFSATFSDEIRELA-KGLVNQPVEISVTPRNAAANTVKQWICPVDKN 228

Query: 256 SKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLAD 315
            K+  LI L+KQ  W QVLVF   +  A+ +AK L++A I+AAA+HG K Q  R++ LAD
Sbjct: 229 QKSALLIQLIKQEDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALAD 288

Query: 316 FKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVC 375
           FK+  ++VLVATD+ ARG+ +D LP V+N DLP     YVHRIGRT RAGA G A+SLV 
Sbjct: 289 FKSGEVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLVS 348

Query: 376 HGEMPNLTAIRNLTARALPLVFLADF-PVTDKPSEKI-IDGAENKVIPKRPPRDKQANRR 433
             E   L  I  L  R L    +  F PV   P   +   G ENK+         Q   R
Sbjct: 349 SEETKLLRDIERLINRVLERQEVEGFSPVHTLPESTLNAHGKENKI----KAVASQRKHR 404

Query: 434 SINKHSVKAFKGK 446
           S  K + +A  G+
Sbjct: 405 SAGKPAPRAGSGR 417