Pairwise Alignments

Query, 269 a.a., ISSod1, transposase OrfB (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 273 a.a., Integrase, catalytic region from Pseudomonas syringae pv. syringae B728a

 Score =  186 bits (472), Expect = 5e-52
 Identities = 105/268 (39%), Positives = 158/268 (58%), Gaps = 9/268 (3%)

Query: 1   MSVSKSGYYDWHKR-----PANVISVETLKLYRLVRQLFKQSRGSLGNREMVKKLRKEGY 55
           + VS +G++    R     P   +S   L ++  +R    +SRGS G   +   L  +G 
Sbjct: 2   LGVSATGFHCHQARCAVNCPQRGLSDAALLVH--IRAAHARSRGSYGWPRIWHGLLADGV 59

Query: 56  QVGRYLVRKIMHRLRLKATQRCAYKVTTQRKHSDAVADNLLNMNFNPVSANQVWAGDVTY 115
           +VG+  V+K+M    +    +  +KVTT   H   +++NLL+  F  +  ++ W GD+TY
Sbjct: 60  RVGKERVQKLMQLHGICGKGKRRFKVTTDSAHDLPISENLLDRQFAVMEPDRAWVGDITY 119

Query: 116 LKTGEGWMYLAVVMDLYSRRIVGWRIDKRMTTDLISKALIKAYNLRQP--ARGLVFHSDR 173
           + T EGW++LAVV+DL+SR+IVGW +D+RM + L+  AL  A+  R P  A GL+FHSDR
Sbjct: 120 IPTDEGWLFLAVVVDLFSRQIVGWSMDERMKSSLVIDALRMAWFKRHPHKASGLLFHSDR 179

Query: 174 GSQYTSKQFGRLLSSYGIRASMGDVGACWDNAVVERFFGSLKHDWIFKVAQPTREFMKQD 233
           GSQY S  F  +L  YGI +SM   G CWDNA  E  FGSLK + +  +   TR   K +
Sbjct: 180 GSQYASFDFRHVLQGYGIVSSMSRRGNCWDNACSETVFGSLKVERLHGLKFKTRRAAKDE 239

Query: 234 VTAYIKYYNLERLHSANNDLSPVEFENS 261
           V  ++ +YN ERLHS  + +SP+++E +
Sbjct: 240 VINWLLWYNQERLHSTLHYVSPMQYEQN 267