Pairwise Alignments

Query, 269 a.a., ISSod1, transposase OrfB (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 285 a.a., Integrase catalytic region (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  191 bits (486), Expect = 1e-53
 Identities = 100/260 (38%), Positives = 151/260 (58%), Gaps = 1/260 (0%)

Query: 1   MSVSKSGYYDWHKRPANVISVETLKLYRLVRQLFKQSRGSLGNREMVKKLRKEGYQVGRY 60
           ++VS  G   +  RPA+      + +   +++  + S GS G   M ++L++ G  VG  
Sbjct: 22  LNVSTRGLRAFRSRPASRRQRMDMVVLAHIKEQSRLSLGSYGRPRMTEELKEVGVDVGHR 81

Query: 61  LVRKIMHRLRLKATQRCAYKVTTQRKHSDAVADNLLNMNFNPVSANQVWAGDVTYLKTGE 120
            V ++M    +   +   +K TT   H+  +A NLLN +F+    NQ WAGD++Y+ T E
Sbjct: 82  RVGRLMRANGITVERTRKFKATTDSDHTFNIAPNLLNRDFSAAGPNQKWAGDISYIWTRE 141

Query: 121 GWMYLAVVMDLYSRRIVGWRIDKRMTTDLISKALIKAYNLRQPARGLVFHSDRGSQYTSK 180
           GW+YL+V++DL+SRR++GW +  RM  DL  +AL  A   R P +G +FHSDRGSQY S 
Sbjct: 142 GWLYLSVILDLHSRRVIGWAVSNRMKRDLAIRALKMAIAFRSPPKGCIFHSDRGSQYCSH 201

Query: 181 QFGRLLSSYGIRASMGDVGACWDNAVVERFFGSLKHDWIFKVAQPTREFMKQDVTAYIK- 239
            + ++L  +G RASM   G C+DNA VE FF ++K + I++ +  TR   +  +  YI  
Sbjct: 202 DYQKILRQHGFRASMSGKGNCYDNAAVETFFKTIKAELIWRRSWATRRQAEMAIFEYING 261

Query: 240 YYNLERLHSANNDLSPVEFE 259
           +YN  R HSA    SPV FE
Sbjct: 262 FYNPRRRHSALGWKSPVAFE 281