Pairwise Alignments

Query, 357 a.a., DNA-damage-inducible protein P (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 430 a.a., DNA polymerase IV from Sinorhizobium meliloti 1021

 Score =  197 bits (501), Expect = 4e-55
 Identities = 127/354 (35%), Positives = 187/354 (52%), Gaps = 9/354 (2%)

Query: 4   IIHVDMDCYFAAVEMRDFPEYRGKPLAVGGSRERRGVISTCNYEARRFGVRSAMATAYAQ 63
           + H+D D ++A+VE RD PE   KP+ +GG +  RGV+ST  Y AR  GVRSAM    A 
Sbjct: 45  LAHIDCDAFYASVEKRDNPELADKPVIIGGGK--RGVVSTACYIARIHGVRSAMPMFKAL 102

Query: 64  KLCPDLILVPGRMQVYKDVSSQIRAIFSRYTELIEPLSLDEAYLDVSDC-KLHKGSATLI 122
           + CP  +++   M+ Y  V  ++RA+    T L++PLS+DEA+LD+S   +LH       
Sbjct: 103 EACPQAVVIKPDMEKYVRVGREVRAMMQELTPLVQPLSIDEAFLDLSGTERLHHDPPART 162

Query: 123 AEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQYVIPPDKVPEFIRTLSLRQIP 182
                + +  E G+T S G++  KFLAKVASDL KP G  VI   +  +F++   +  I 
Sbjct: 163 LARFAKRVEQEIGITVSVGLSYCKFLAKVASDLQKPRGFSVIGQAEAADFLKAKPVTLIW 222

Query: 183 GVGKVTAEKLSSLGLNTCGDVQTYPKQELITRFGKFGAVLIERAQGIDDRGLSVSRERKS 242
           GVGK  A  L   G+   G +QT  + +L+ R+G  G  L   ++G+D+R + +  E KS
Sbjct: 223 GVGKAFAATLERDGIRAIGQLQTMEEADLMRRYGTMGRRLYRLSRGLDERSVEIDGEAKS 282

Query: 243 VGVETTLAQDIYTLEQCQQVMPGLIQELSTRLSRSAKDRQIHKQVVKLKFSDFKQTTIEH 302
           V  ETT   D+   E     + GL ++++ RL +SA   Q    V+KLK +DFK  T   
Sbjct: 283 VSSETTFNDDLARQEDLVAHLRGLSEQVAFRLRKSALAGQ--TVVLKLKTADFKTRTRNR 340

Query: 303 RSND---VSVMMFYELLAQAIARQDGRGIRLLGVAVG-LSDKSLISEVDPLQTQ 352
           R      ++  +F   L       DG   RL+G+ V  L D  L    D +  Q
Sbjct: 341 RLESPTRLADRIFRTGLQLLEKEVDGTKYRLIGIGVSDLVDPDLADPPDLVDPQ 394