Pairwise Alignments

Query, 357 a.a., DNA-damage-inducible protein P (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 369 a.a., DNA polymerase IV from Sinorhizobium meliloti 1021

 Score =  257 bits (656), Expect = 4e-73
 Identities = 160/362 (44%), Positives = 221/362 (61%), Gaps = 13/362 (3%)

Query: 1   MRKIIHVDMDCYFAAVEMRDFPEYRGKPLAVGGSRERRGVISTCNYEARRFGVRSAMATA 60
           +RKIIH+DMD ++A+VE RD PE RGKP+AVG   E RGV++  +YEAR+FGV SAM + 
Sbjct: 16  VRKIIHIDMDAFYASVEQRDNPELRGKPVAVGYP-EARGVVAAASYEARKFGVHSAMPSV 74

Query: 61  YAQKLCPDLILVPGRMQVYKDVSSQIRAIFSRYTELIEPLSLDEAYLDVSDCKLHKGSAT 120
            A++ CP+LI VP R  VY+ VS QI+AIF+ YT L+EPLSLDEAYLDV++       AT
Sbjct: 75  TAKRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLVEPLSLDEAYLDVTENFRGLKLAT 134

Query: 121 LIAEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQYVIPPDKVPEFIRTLSLRQ 180
            IAE IR  I AET LTASAGV+  KFLAK+ASD  KP+G +VI P   P+F++ L +++
Sbjct: 135 EIAEEIRGRIRAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITPKHGPDFVQALPVKK 194

Query: 181 IPGVGKVTAEKLSSLGLNTCGDVQTYPKQELITRFGKFGAVLIERAQGIDDRGLSVSRER 240
             GVG  TAEK+  LG+ T  D+++     L   FGK G      A+GID+R +   R R
Sbjct: 195 FHGVGPATAEKMKRLGIETGADLKSRDLAFLQQHFGKSGPYFYWIARGIDERKVKPDRIR 254

Query: 241 KSVGVETTLAQDIYTLEQCQQVMPGLIQELSTRLSRSAKDRQIHKQVVKLKFSDFKQ--- 297
           KS+G E T  +D++ LE  +  +  LI ++      S    +     +K+K++DF Q   
Sbjct: 255 KSIGAEDTFREDVHDLETARAGLKPLIDKVWHYCEASGIRGK--TMTLKVKWADFTQITR 312

Query: 298 --TTIEHRSNDVSVMMFYELLAQAIARQDGRGIRLLGVAVGLSDKSLISEVDPLQTQLVL 355
             T +   ++   +    ELL   I     +GIRLLGV +     SL +  D  + QL L
Sbjct: 313 SKTIVAPIASVAEMSEIAELLLSPIFPAP-KGIRLLGVTL----SSLDTVDDRSEPQLAL 367

Query: 356 SI 357
           ++
Sbjct: 368 AL 369