Pairwise Alignments

Query, 357 a.a., DNA-damage-inducible protein P (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 431 a.a., DNA polymerase IV from Rhodopseudomonas palustris CGA009

 Score =  189 bits (481), Expect = 9e-53
 Identities = 126/351 (35%), Positives = 186/351 (52%), Gaps = 9/351 (2%)

Query: 4   IIHVDMDCYFAAVEMRDFPEYRGKPLAVGGSRERRGVISTCNYEARRFGVRSAMATAYAQ 63
           + H+D D ++A VE RD P    KP+ VGG +  RGV+S   Y AR FGVRSAM    A 
Sbjct: 48  LAHIDCDAFYATVEKRDNPALADKPVIVGGGK--RGVVSAACYIARTFGVRSAMPMFKAL 105

Query: 64  KLCPDLILVPGRMQVYKDVSSQIRAIFSRYTELIEPLSLDEAYLDVSDC-KLHKGSATLI 122
            LCP   +V   M  Y  V  ++R      T L+EPLS+DEA+LD++   ++H      +
Sbjct: 106 ALCPSATVVRPDMAKYVRVGREVRQAMRALTPLVEPLSIDEAFLDLAGTERMHGMIPAKV 165

Query: 123 AEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQYVIPPDKVPEFIRTLSLRQIP 182
                R++  + G+TAS G++  KFLAK+ASDL+KP G   +  D+  E +    +  I 
Sbjct: 166 LAKFAREVERDIGVTASVGLSCNKFLAKIASDLDKPRGFAALDQDEAREMLAPRPVGFIF 225

Query: 183 GVGKVTAEKLSSLGLNTCGDVQTYPKQELITRFGKFGAVLIERAQGIDDRGLSVSRERKS 242
           GVG  TA +L+S G  T  D+Q   + EL+ +FG  G  L   A+GIDDR +   R  KS
Sbjct: 226 GVGPATASRLASRGFRTIADLQRADEIELMRQFGDEGRRLWRLARGIDDRKVVPDRGAKS 285

Query: 243 VGVETTLAQDIYTLEQCQQVMPGLIQELSTRLSRSAKDRQIHKQVVKLKFSDFKQTT--- 299
           +  ETT   DI  L   ++++  L +++S+RL  +A         +KLK +DF+Q T   
Sbjct: 286 ISNETTFEDDIRDLATLEKILWRLSEKVSSRLKSAALSGS--TITLKLKTADFRQRTRAQ 343

Query: 300 IEHRSNDVSVMMFYELLAQAIARQDGRGIRLLGVAV-GLSDKSLISEVDPL 349
             H    ++  +F           DG   RL+G  V  L++++  +E D L
Sbjct: 344 TIHAPTQMANRIFSVSREMLSKEVDGTAFRLIGTGVSALTEQTGPAEDDML 394