Pairwise Alignments

Query, 357 a.a., DNA-damage-inducible protein P (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 378 a.a., DNA polymerase IV from Phaeobacter inhibens DSM 17395

 Score =  193 bits (491), Expect = 5e-54
 Identities = 119/301 (39%), Positives = 175/301 (58%), Gaps = 9/301 (2%)

Query: 7   VDMDCYFAAVEMRDFPEYRGKPLAVGGSRERRGVISTCNYEARRFGVRSAMATAYAQKLC 66
           +D D ++A+VE RD P+   KP+ +GG +  RGV+ST  Y AR  GVRSAM    A KLC
Sbjct: 1   MDCDAFYASVEKRDNPDLADKPVVIGGGQ--RGVVSTACYVARIRGVRSAMPMFQALKLC 58

Query: 67  PDLILVPGRMQVYKDVSSQIRAIFSRYTELIEPLSLDEAYLDVSDCKLHKGS--ATLIAE 124
           PD +++  RM VY DVS QIRA+    T  +EPLSLDEA++D+S  +   G+  A ++A 
Sbjct: 59  PDAVVIKPRMNVYVDVSRQIRAMMDELTPDVEPLSLDEAFMDLSGTQRLHGAPPAVMLAR 118

Query: 125 AIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQYVIPPDKVPEFIRTLSLRQIPGV 184
            ++R +  E G+T S G++  KFLAKVASDL+KP G  VI   +  EF++   +R I G+
Sbjct: 119 LVKR-MKDELGVTGSIGLSHNKFLAKVASDLDKPRGFSVIGAAETSEFLKDKPVRLIWGI 177

Query: 185 GKVTAEKLSSLGLNTCGDVQTYPKQELITRFGKFGAVLIERAQGIDDRGLSVSRERKSVG 244
           G      L   G+ +  D+  + + +L  RFG  G  L   A+G D R +S +   KS+ 
Sbjct: 178 GPAAQASLDKAGIRSFSDLLRWDRTDLNARFGSMGERLWHLARGQDRRRVSSNAPIKSIS 237

Query: 245 VETTLAQDIYTLEQCQQVMPGLIQELSTRLSRSAKDRQIHKQVVKLKFSDFKQTTIEHRS 304
            ETT  +D  +LE    V+ G +  L+ ++S  AK RQ+  +VV LK      +++  R 
Sbjct: 238 NETTFFEDTASLE----VLDGHLWRLAEKVSDRAKARQLAGRVVTLKLKRANHSSLTRRQ 293

Query: 305 N 305
           +
Sbjct: 294 S 294