Pairwise Alignments

Query, 357 a.a., DNA-damage-inducible protein P (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 439 a.a., DNA polymerase IV from Pedobacter sp. GW460-11-11-14-LB5

 Score =  174 bits (442), Expect = 3e-48
 Identities = 97/302 (32%), Positives = 172/302 (56%), Gaps = 4/302 (1%)

Query: 2   RKIIHVDMDCYFAAVEMRDFPEYRGKPLAVGGSRERRGVISTCNYEARRFGVRSAMATAY 61
           R+IIH+D D +F +VE+R  P+  GKP+ +GG  +R GV+++C+YEAR++G+ SAM    
Sbjct: 5   RQIIHMDQDAFFVSVEIRKNPKLSGKPVIIGGGGDR-GVVASCSYEARQYGIHSAMPGRT 63

Query: 62  AQKLCPDLILVPGRMQVYKDVSSQIRAIFSRYTELIEPLSLDEAYLDVSDCKLHKGSATL 121
           A+ LCP  I + G M+ Y   S +I  + +    L E  S+DE Y+D++      G    
Sbjct: 64  AKLLCPQAIFLKGDMEEYSKASHEITEVIADKVPLFEKASIDEHYIDMTGMDRFFGCMKF 123

Query: 122 IAEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQYVIPPDKVPEFIRTLSLRQI 181
            +E +R+ I+ E GL  S G++  K +AK+A++ +KP+G+  +   ++  F+  L++ +I
Sbjct: 124 ASE-LRQTIIREMGLPISFGLSINKTVAKIATNESKPSGEMQVTFPQLRPFLDPLAIHKI 182

Query: 182 PGVGKVTAEKLSSLGLNTCGDVQTYPKQELITRFGKFGAVLIERAQGIDDRGLSVSRERK 241
           PG+G  T +KLS +G+     +   P+Q +    G+ G  L ++A GID   +   RERK
Sbjct: 183 PGIGHATYKKLSEMGVREILTLTQIPQQLMFKILGQHGLSLWQKANGIDLSPVVPYRERK 242

Query: 242 SVGVETTLAQDIYTLEQCQQVMPGLIQELSTRLSRSAKDRQIHKQVVKLKFSDFKQTTIE 301
           S+G + T   D   + + + ++ G++  L+ +L    K        V +++++F+  T +
Sbjct: 243 SIGTQATFESDTMDMAKLKAIITGMVTGLTFQLRNQKKLTAC--ITVTVRYTNFETVTQQ 300

Query: 302 HR 303
            R
Sbjct: 301 ER 302