Pairwise Alignments

Query, 357 a.a., DNA-damage-inducible protein P (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 387 a.a., nucleotidyltransferase/DNA polymerase involved in DNA repair from Dechlorosoma suillum PS

 Score =  192 bits (488), Expect = 1e-53
 Identities = 118/324 (36%), Positives = 181/324 (55%), Gaps = 33/324 (10%)

Query: 2   RKIIHVDMDCYFAAVEMRDFPEYRGKPLAVGG---SRERR-----------------GVI 41
           R+I H+DMD +FA+VE+  +PE RG+P+ VGG    R RR                 GVI
Sbjct: 9   RRIAHLDMDAFFASVELLHYPELRGRPVVVGGRAVDRPRRQADGSLHFARLRDYVGRGVI 68

Query: 42  STCNYEARRFGVRSAMATAYAQKLCPDLILVPGRMQVYKDVSSQIRAIFSRYTELIEPLS 101
           +T  YEAR  GV S M    A +L PD IL+P     Y+D S + +A  +     IE   
Sbjct: 69  TTSTYEARALGVFSGMGLMKAAQLAPDAILLPANFDAYRDYSRRFKAAVAAIAPCIEDRG 128

Query: 102 LDEAYLDVSDCKLHKGSATL-IAEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNG 160
           +DE Y+D+S    H   ATL +A  ++  +LA TGLT S G+ P K L+K+ SDL+KP+G
Sbjct: 129 IDEIYIDLS----HIEEATLPLARRLKAAVLAATGLTCSIGITPNKLLSKICSDLDKPDG 184

Query: 161 QYVIPPDKVPEFIRTLSLRQIPGVGKVTAEKLSSLGLNTCGDVQTYPKQELITRFGK-FG 219
             V+  ++VP  I  L  ++I G+G    E+L  LG+++ GD+   P + L+  FG+  G
Sbjct: 185 ITVLGMEEVPTRIWPLVAKKINGIGPKANERLGQLGIHSIGDLAAAPPEMLVQHFGRSTG 244

Query: 220 AVLIERAQGIDDRGLSVSRERKSVGVETTLAQDIYTLE---QCQQVMPGLIQELSTRLSR 276
           A L   A GID+R LS SRE KS+  E+T ++D++      +  ++  G+   ++  L+R
Sbjct: 245 AWLHRAAHGIDERPLSTSREPKSISRESTFSRDLHARHDRAELSEIFTGMCLRVADDLAR 304

Query: 277 SAKDRQIHKQV-VKLKFSDFKQTT 299
                 + + + +KL+++DF+  T
Sbjct: 305 QG---YVARTIGIKLRYADFQSVT 325