Pairwise Alignments

Query, 357 a.a., DNA-damage-inducible protein P (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 481 a.a., DNA-directed DNA polymerase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  236 bits (602), Expect = 9e-67
 Identities = 139/340 (40%), Positives = 203/340 (59%), Gaps = 12/340 (3%)

Query: 2   RKIIHVDMDCYFAAVEMRDFPEYRGKPLAVGGSRERRGVISTCNYEARRFGVRSAMATAY 61
           R I+H+DMD +FA+VE  D P  RGKP+AVGGS   RGV+S  +YEARRFGVRSA+  + 
Sbjct: 4   RWIMHIDMDAFFASVEQMDDPSLRGKPVAVGGSH--RGVVSAASYEARRFGVRSALPMST 61

Query: 62  AQKLCPDLILVPGRMQVYKDVSSQIRAIFSRYTELIEPLSLDEAYLDVSDCKLHKGSATL 121
           A +LCP LI+VPGRM+ Y ++S +I      ++ L+EP S+DEAYLD +  +   G    
Sbjct: 62  ALRLCPHLIVVPGRMRRYAEISHRIMDALREFSPLVEPASVDEAYLDATGLERLFGPVEN 121

Query: 122 IAEAIRRDILAETG-LTASAGVAPVKFLAKVASDLNKPNGQYVIPPDKVPEFIRTLSLRQ 180
           +  A++  +L  TG LT S G APVKFLAK+ASD+NKPNG +++ P+ V EF+RTL + +
Sbjct: 122 MGMAVKARVLDVTGGLTCSVGAAPVKFLAKIASDVNKPNGLFILYPEDVAEFLRTLPVGR 181

Query: 181 IPGVGKVTAEKLSSLGLNTCGDVQTYPKQELITRFGKFGAVLIERAQGIDDRGLSVSRER 240
           IPGVGK + + L  LG+   GDV  Y ++    RFGK G  L ERA G+D R +    E 
Sbjct: 182 IPGVGKRSLDALEQLGVRFAGDVLRYSREFWERRFGKGGVHLHERASGVDPREVEPYSEP 241

Query: 241 KSVGVETTLAQDIYTLEQCQQVMPGLIQELSTRLSRSAKDRQIHKQVV--KLKFSDFKQT 298
           KS   E T ++D       + V+   +   + R+  S + +++  + +  K+K++DF+  
Sbjct: 242 KSESAENTFSEDTAD----RAVLRRWLLAQAERVGASLRRQRLAGRTITLKVKYADFRSI 297

Query: 299 TIEHRSNDVSV---MMFYELLAQAIARQDGRGIRLLGVAV 335
           +  H   + +     +F E      A      +RL+GV V
Sbjct: 298 SRSHSLPEPTASTETIFDEACRLLDALTLADKVRLIGVGV 337