Pairwise Alignments

Query, 357 a.a., DNA-damage-inducible protein P (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 417 a.a., DNA-directed DNA polymerase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  189 bits (481), Expect = 9e-53
 Identities = 127/342 (37%), Positives = 186/342 (54%), Gaps = 14/342 (4%)

Query: 4   IIHVDMDCYFAAVEMRDFPEYRGKPLAVGGSRERRGVISTCNYEARRFGVRSAMATAYAQ 63
           I H+D D +FA+VE RD P    +P+ +GG R  RGV+ST  Y AR  GVRSAM    A 
Sbjct: 37  IAHMDCDAFFASVEKRDNPALADRPVIIGGGR--RGVVSTACYVARIKGVRSAMPMFKAL 94

Query: 64  KLCPDLILVPGRMQVYKDVSSQIRAIFSRYTELIEPLSLDEAYLDVSD-CKLHKGSATLI 122
            LCPD +++  R + Y + S  IRA+    T  +EPLSLDEA++D+    +LH     ++
Sbjct: 95  ALCPDAVVIKPRFEAYVEASRAIRAMMDEMTPDVEPLSLDEAFMDLGGTARLHGAPPAVM 154

Query: 123 AEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQYVIPPDKVPEFIRTLSLRQIP 182
              + + +  E GLT S G++  KFLAK+ASDL+KP G  VI   +  +F+    +R I 
Sbjct: 155 LARLVKRMEDELGLTGSIGLSHNKFLAKIASDLDKPRGFAVIGKAETLDFLADKPVRMIW 214

Query: 183 GVGKVTAEKLSSLGLNTCGDVQTYPKQELITRFGKFGAVLIERAQGIDDRGLSVSRERKS 242
           GVG      L + G+ T  D+  + + +L+ RFG  G  L   A+G D R +S     KS
Sbjct: 215 GVGAAGQAALEAAGIRTFTDLARWEQTDLVARFGSMGLRLWHLARGEDARAVSGRSPVKS 274

Query: 243 VGVETTLAQDIYTLEQCQQVMPGLIQELSTRLSRSAKDRQIHKQVV--KLKFSDFKQTTI 300
           +  ETT ++D         ++ G +  ++ +++  AK + +  +VV  KLK SD    T 
Sbjct: 275 ISNETTFSEDTAD----PDLLEGHVWRMAEKVAGRAKAQGLAGRVVVLKLKKSDHGLITR 330

Query: 301 EHRSND---VSVMMFYELLAQAIARQDGRGIRLLGVAVGLSD 339
            H   D   ++  +F E +A   A  DG+  RLLG  VGLSD
Sbjct: 331 RHALRDATQIADRVFREAMALFRAVPDGQSYRLLG--VGLSD 370