Pairwise Alignments

Query, 357 a.a., DNA-damage-inducible protein P (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 381 a.a., DNA-directed DNA polymerase from Burkholderia phytofirmans PsJN

 Score =  174 bits (441), Expect = 3e-48
 Identities = 116/362 (32%), Positives = 182/362 (50%), Gaps = 32/362 (8%)

Query: 2   RKIIHVDMDCYFAAVEMRDFPEYRGKPLAVGGSRER--------------------RGVI 41
           R+I H+DMD +FA+ E+  +PE RG+ + V G R                      RGV+
Sbjct: 5   RRIAHIDMDAFFASCELSQYPELRGQAMVVAGRRSDAPRVNADGTREFARLRDYAGRGVL 64

Query: 42  STCNYEARRFGVRSAMATAYAQKLCPDLILVPGRMQVYKDVSSQIRAIFSRYTELIEPLS 101
           +T  YEAR FGV S M T  A +L PD IL+P    +Y+  S   +      +  IE + 
Sbjct: 65  TTATYEARAFGVHSGMPTMQAARLAPDAILLPVNFDLYRTYSRLFKDAIRSVSPTIEDVG 124

Query: 102 LDEAYLDVSDCKLHKGSATLIAEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQ 161
           +DE Y D+S   L    +  IA  ++  +   T LT S G+AP K LAK+ SD+ KP+G 
Sbjct: 125 IDEVYADLS---LLNDESEQIARKLKSAVFEATNLTCSVGIAPNKLLAKLCSDIQKPDGI 181

Query: 162 YVIPPDKVPEFIRTLSLRQIPGVGKVTAEKLSSLGLNTCGDVQTYPKQELITRFGK-FGA 220
            ++  + +   I  ++ ++I G+G     KL+SLG+ T G++    +Q LI +FG+ +GA
Sbjct: 182 TILRLEDLQARIWPMAAKKINGIGPKANAKLTSLGITTIGEIAACSEQWLIEQFGRSYGA 241

Query: 221 VLIERAQGIDDRGLSVSRERKSVGVETTLAQDIYTLEQCQQV---MPGLIQELSTRLSRS 277
            L   + G+DDR +    E  S+  ETT  QD++ +   Q++      L ++++  L R 
Sbjct: 242 WLHRVSHGLDDRPVVTHSEPVSMSRETTFEQDLHAVRHRQELGTAFTRLCEQVALDLQR- 300

Query: 278 AKDRQIHKQVVKLKFSDFKQTTIEHRSND--VSVMMFYELLAQAIARQD-GRGIRLLGVA 334
            K     +  +KL+F+DF+  T +    +             Q + R D  + IRLLGV 
Sbjct: 301 -KGYLARRIGIKLRFNDFQTVTRDVTLPEPVADAKALRHAATQCLKRVDLVKSIRLLGVK 359

Query: 335 VG 336
            G
Sbjct: 360 AG 361