Pairwise Alignments

Query, 418 a.a., NADH:ubiquinone oxidoreductase, Na translocating, beta subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 349 a.a., CDP-6-deoxy-delta-3,4-glucoseen reductase from Herbaspirillum seropedicae SmR1

 Score =  102 bits (253), Expect = 2e-26
 Identities = 93/376 (24%), Positives = 163/376 (43%), Gaps = 68/376 (18%)

Query: 55  KAITTGAGGKLLGVLANNGIFVSSACGGGGSCGQCRVVVKSGGGDILPTELDHISKGDAR 114
           +  T  A   +L      G+ +   C  G +C  C+  + SG  +  P +   +S  + +
Sbjct: 12  RQFTCDADESILTAAIRAGVGLPYGCKNG-ACSSCKGKLVSGQVEHGPHQERALSAHEQQ 70

Query: 115 KGCRLSCQVNVKNDMEIELDEEIFG-----IKKWECAVISNDNKATFIKELKLQIPDGES 169
            G  L C    ++D+ IE   E+ G     ++K    V   D  A  +  L LQ+P  + 
Sbjct: 71  LGMALFCVAKPQSDVTIEA-REVAGAGDIPVRKLPVRVAKLDKVADDVIVLSLQLPANDR 129

Query: 170 VPFRAGGYIQIEAPAHHVKYADFDVPAKYRGDWEHFGFFKLESKVDEETIRAYSMANYPE 229
           + ++AG Y++                           F   + K      R+YSMA  P 
Sbjct: 130 LQYKAGQYVE---------------------------FLLRDGKR-----RSYSMATAPH 157

Query: 230 EFGIIMLNVRIATPPPRNLTLPCGKMSSYIWS-LKAGDKVTISGPFGEFFAK-DTDAEMV 287
           +   + L++R          LP G  +  +++ LK  D + I GP G FF + D+D  ++
Sbjct: 158 KDEHMSLHIR---------HLPGGLFTDQVFTTLKERDILRIEGPLGTFFLREDSDKPII 208

Query: 288 FIGGGAGMAPMRSHIFDQLKRLKSKRKMSFWYGARSKREMFYVEDFDGLAAEND----NF 343
            +  G G AP+++ I +QL+   SKR ++ ++G R  ++++     D L  + +    NF
Sbjct: 209 LLASGTGFAPIKA-IVEQLEHAGSKRPVTLYWGGRRPQDLY----MDALCQQWEQTLPNF 263

Query: 344 VWHVALSDPQPEDNWDGYTGFIHNVLYENY--LKNHDAPEDCEFYMCGPP-MMNAAVIGM 400
            +   +S+ Q EDNW G TGF+H  + E++  L  H      + Y CG P ++ +A    
Sbjct: 264 KYVPVVSNAQAEDNWSGRTGFVHRAVMEDFPDLSGH------QVYACGAPIVVESAQRDF 317

Query: 401 LKNLGVEDENILLDDF 416
               G+  +    D F
Sbjct: 318 SAQCGLPQDEFYADSF 333