Pairwise Alignments

Query, 202 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 237 a.a., electron transport complex, RnfABCDGE type, E subunit from Pseudomonas stutzeri RCH2

 Score = 79.7 bits (195), Expect = 4e-20
 Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 22/166 (13%)

Query: 4   YISLLIRSVFIENMALAFFLGMCTFLAVSKKVTTAMGLGIAVVVVLTISVPANQVIYQGL 63
           Y  L +  ++  N AL   LG+C  L VS     A+GLG+A ++VLT S     ++ +G+
Sbjct: 6   YRELTVNGLWKNNPALVQLLGLCPLLGVSNSAVNALGLGLATMLVLTCSNIGVSLV-RGV 64

Query: 64  LAPGALAWAGAPEADLSFLKFITFIGVIAALVQILEMALDKYFPPLYNALGIFLPLITVN 123
           +                 ++   F+ +IAAL   +E+ +  +   LY  LGIF+PLIT N
Sbjct: 65  VNTA--------------VRLPAFVMIIAALTTCIELLMQAFTYELYQILGIFIPLITTN 110

Query: 124 CAIFGAVSFMVERDYKLGESLVFGFGS---GVGWALAIVLMAGIRE 166
           C I G       +       L+ GF     G+G+ L +V++ G+RE
Sbjct: 111 CVILGRADGFAAKH----NPLIAGFDGVVMGIGFCLVLVVLGGLRE 152