Pairwise Alignments

Query, 202 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 210 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit D from Vibrio cholerae E7946 ATCC 55056

 Score = 52.0 bits (123), Expect = 8e-12
 Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 16/146 (10%)

Query: 23  LGMCTFLAVSKKVTTAMGLGIAVVVVLTISVPANQVIYQGLLAPGALAWAGAPEADLSFL 82
           LG+C+ LAV+ K+ TA  + +AV+ V  +S     +I   +           P +    +
Sbjct: 26  LGVCSALAVTTKLETAFVMTLAVMFVTALSNFFVSLIRNHI-----------PNS----V 70

Query: 83  KFITFIGVIAALVQILEMALDKYFPPLYNALGIFLPLITVNCAIFGAVSFMVERDYKLGE 142
           + I  + +IA+LV +++  L  Y   +   L +F+ LI  NC + G       +   +  
Sbjct: 71  RIIVQMAIIASLVIVVDQILKAYLYDISKQLSVFVGLIITNCIVMGRAEAFAMKSEPI-P 129

Query: 143 SLVFGFGSGVGWALAIVLMAGIREKL 168
           S + G G+G+G+   ++ +   RE L
Sbjct: 130 SFIDGIGNGLGYGFVLMTVGFFRELL 155