Pairwise Alignments

Query, 262 a.a., NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 256 a.a., Na(+)-translocating NADH-quinone reductase subunit C (RefSeq) from Shewanella loihica PV-4

 Score =  181 bits (460), Expect = 1e-50
 Identities = 98/257 (38%), Positives = 153/257 (59%), Gaps = 5/257 (1%)

Query: 1   MASNKDSFGRTLFIVVGLCLICAIFVSTAAVLLRPTQAENKLLDKQKYILEAAGLIDTKA 60
           MA  KD+   T+   + LCL C+  ++  A +L+  +   K  + ++ +L AA  ID   
Sbjct: 1   MAFKKDTVVGTMIFTLVLCLSCSFMITGTAEVLKERKLVKKRDELKRNVLLAAD-IDISG 59

Query: 61  GKVTKAQILETYGKHIEAKLVNLKTGDWVEGVDANTFDQRKAARDVKTSFVPENDIASVK 120
            K  +      + + ++  LV L +G      +   FD R AA + +TS  P+ DIA +K
Sbjct: 60  DKDFRT----IFEQSVKPLLVELDSGVIDSQENVLDFDDRMAAINPQTSSKPKKDIAKIK 115

Query: 121 RVSEDAVVYLVRDDQGKLTSVILPVHGYGLWSTMYAFLALDADLNTIQSLVYYEHGETPG 180
             +  A V+ V DD+G+L +V+LP++G GLWS +Y ++AL  DLNTI+++V+YEHGETPG
Sbjct: 116 TRANQARVFKVFDDKGELHAVVLPIYGKGLWSIIYGYVALKPDLNTIENVVFYEHGETPG 175

Query: 181 LGGEVQNAQWKAKWHGKKLFDAQGNIAISVTKNPAVASTEYGVDALSGATLTSNGVQHSL 240
           +G  + +  W  K  GK+LFD +G ++  V K  A A   +GVDA+SGAT+T  GVQ ++
Sbjct: 176 IGDFLDDKAWTDKLKGKQLFDEKGQVSFKVVKGGAKAGDLHGVDAVSGATMTGRGVQRAM 235

Query: 241 TFWLGKEGFASFIEKAR 257
            FW G EG+ +F+ K +
Sbjct: 236 QFWFGVEGYQTFLHKLK 252