Pairwise Alignments

Query, 377 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 332 a.a., Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) from Pseudomonas fluorescens FW300-N2E2

 Score = 81.3 bits (199), Expect = 4e-20
 Identities = 79/277 (28%), Positives = 118/277 (42%), Gaps = 24/277 (8%)

Query: 111 DVALVLMKLPKNLTYFAHQLMRLSQILPAGCRV-LVGAKAKSIN--SSLLALFAK--HLG 165
           D A+V +   K+LT +   ++       AG  V LVG K   I   S  L  F K   L 
Sbjct: 69  DTAVVFLPKAKDLTDY---ILNAVAARLAGREVYLVGEKRSGIEGASKQLNPFGKPRKLD 125

Query: 166 PANASLAWKKTRVITCISDGKPRALPN---GITWNIP--EFNLTISNLSNVFAANKLDIG 220
            A     W+ T          P A P      T+ +P  E  L + +L  VF+  +LD G
Sbjct: 126 SARHCQLWQVTVA------NAPEATPLESLAQTYELPLAEGPLKVISLPGVFSHGRLDRG 179

Query: 221 ARIMLDNLPQGKFNTVVDLGCGNGVLGLRAAQLYPNADIHFIDDSEMAVASAKANWTMNQ 280
           + ++L++L +     ++D GCG GVLG    + YP+  +  +D    A AS++     N 
Sbjct: 180 SALLLEHLDKLPSGHLLDFGCGAGVLGAAVKRRYPHNTVTLLDVDAFAAASSRLTLAANG 239

Query: 281 LAEGKGHFHWDDCMTHLPEDIEPDLVLCNPPFHQGEAITDHIAWQMFLDARRRLKNGGIL 340
           L   +      D +   P  +    +L NPPFH G     H    +   A + LKNGG L
Sbjct: 240 L---EAEVLTGDGIDAAPMGL--SAILSNPPFHVGVHTDYHATENLLRKAAKHLKNGGEL 294

Query: 341 HIVGNRHLAYHVKLQRLFKNCTTVASNGKFVILQAQK 377
            +V N  L Y   ++     C   A    F I +A++
Sbjct: 295 RLVANSFLKYQPLIEEHLGVCAIKAEGQGFRIYRAKR 331