Pairwise Alignments

Query, 377 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 332 a.a., 16S rRNA methyltransferase from Pseudomonas fluorescens FW300-N2E3

 Score = 81.3 bits (199), Expect = 4e-20
 Identities = 74/271 (27%), Positives = 115/271 (42%), Gaps = 12/271 (4%)

Query: 111 DVALVLMKLPKNLTYFAHQLMRLSQILPAGCRVLVGAKAKSINSSL--LALFAK--HLGP 166
           + A+V +   K+LT +   L  L+  L      LVG K   I  +   L+ F K   L  
Sbjct: 69  ETAVVFLPKSKDLTDYI--LNALASRLAGRELYLVGEKRSGIEGAAKQLSPFGKPRKLDS 126

Query: 167 ANASLAWKKTRVITCISDGKPRALPNGITWNIPEFNLTISNLSNVFAANKLDIGARIMLD 226
           A     W+ T V          +L       + E  L + +L  VF+  +LD G+ ++L+
Sbjct: 127 ARHCQLWQVT-VANAPEAKSLESLAQEYELPLAEGPLKVISLPGVFSHGRLDRGSALLLE 185

Query: 227 NLPQGKFNTVVDLGCGNGVLGLRAAQLYPNADIHFIDDSEMAVASAKANWTMNQLAEGKG 286
           +L +     ++D GCG GVLG    + YP+  +  +D    A AS++     N L   + 
Sbjct: 186 HLDKLPSGHLLDFGCGAGVLGAAVKRRYPHNTVTLLDVDAFAAASSRLTLAANGL---EA 242

Query: 287 HFHWDDCMTHLPEDIEPDLVLCNPPFHQGEAITDHIAWQMFLDARRRLKNGGILHIVGNR 346
                D +   P  +    +L NPPFH G     H    +   A + LKNGG L +V N 
Sbjct: 243 EVLTGDGIDAAPMGL--SAILSNPPFHVGVHTDYHATENLLRKAAKHLKNGGELRLVANS 300

Query: 347 HLAYHVKLQRLFKNCTTVASNGKFVILQAQK 377
            L Y   ++     C   A    F I +A++
Sbjct: 301 FLKYQPLIEEHLGVCAIKAEGQGFRIYRAKR 331