Pairwise Alignments

Query, 377 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 376 a.a., ribosomal RNA large subunit methyltransferase G from Vibrio cholerae E7946 ATCC 55056

 Score =  263 bits (672), Expect = 6e-75
 Identities = 157/385 (40%), Positives = 226/385 (58%), Gaps = 18/385 (4%)

Query: 1   MTTQFSVAGIELELFRYPASQESNLQAWDAADEHLINSLIEGGQIAVPTA----IINDSF 56
           M T+ ++    L L R+P      LQAWDA DE+LI  +    Q+A+P +    IIND F
Sbjct: 1   MKTELTLLEQTLTLHRFPKRNNETLQAWDAGDEYLIQHV---EQLALPESSHIVIINDHF 57

Query: 57  GALSCALSRINPNWPLRVETDARTSFLGTEQNHHRNQLPMDNLQWFTSRDTLPKDVALVL 116
           G LSC  S+ +    + + +D+  +   T+ N  +NQ P   +Q  T+ D +P D ++VL
Sbjct: 58  GTLSCWFSQKHK---VSMMSDSYIAHQATQANLQQNQRPP--VQLLTTLDPVPNDASVVL 112

Query: 117 MKLPKNLTYFAHQLMRLSQILPAGCRVLVGAKAKSINSSLLALFAKHLGPANASLAWKKT 176
           ++LPK+  +    L +L + L     ++   KAK I++S L LF KHLGP   SLAWKK 
Sbjct: 113 LQLPKSNRHLVWILSQLRKALSPNIPIIAVNKAKEIHTSTLNLFEKHLGPTTTSLAWKKH 172

Query: 177 RVITCISDGKPRALPNG-ITWNIPEFNLTISNLSNVFAANKLDIGARIMLDNLPQGK-FN 234
           R++   +   P    N    W+I  + +T++NL NV++   LD+G+R +L++LP      
Sbjct: 173 RLVFSSATVNPANEVNPECGWSIEPYAITLTNLPNVYSGESLDLGSRFILEHLPADPTLE 232

Query: 235 TVVDLGCGNGVLGLRAAQLYPNADIHFIDDSEMAVASAKANWTMNQLAEGKGHFHWDDCM 294
             +DLGCGNGVL +R  QL P A I  +D+S MA+ASA+ N   N L +   H   ++C+
Sbjct: 233 DFIDLGCGNGVLSVRLGQLNPQAKITCVDESFMAIASAQKNLHDN-LGKRDIHCIANNCL 291

Query: 295 THLPEDIEPDLVLCNPPFHQGEAITDHIAWQMFLDARRRLKNGGILHIVGNRHLAYHVKL 354
              P      +++CNPPFHQ + ITDHIAWQMF D++  LK GG L ++GNRHL Y VKL
Sbjct: 292 DGFPAH-SSSMIVCNPPFHQQQTITDHIAWQMFCDSKHVLKKGGKLWVIGNRHLGYDVKL 350

Query: 355 QRLF--KNCTTVASNGKFVILQAQK 377
            RLF   +   +A+N KFVILQA K
Sbjct: 351 ARLFGKSHVRVIANNSKFVILQAIK 375