Pairwise Alignments

Query, 871 a.a., extracellular nuclease (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1193 a.a., Nuclease from Xanthomonas campestris pv. campestris strain 8004

 Score = 96.3 bits (238), Expect = 1e-23
 Identities = 172/682 (25%), Positives = 259/682 (37%), Gaps = 122/682 (17%)

Query: 191 KIVPIYQVQGAGESSPYVPAGAFESESEVTVRGVVTARGENLFKGFYLQE--VKGDNSPY 248
           +++PI+ +QG G  SP            V   G+VTAR      GF+LQ    + D  P 
Sbjct: 318 QLLPIHAIQGKGARSPL-------DGQVVATSGIVTARRS---AGFFLQAPTAEADADPA 367

Query: 249 TSDGVFVFLGEAPPPAIQPGVEICVQGKVKEYFG--------LTQID-IKTDKKFEAGTK 299
           TS+GV+V+ G APP     G  + VQG V EY          LT+I  + T      G  
Sbjct: 368 TSEGVYVYTGSAPPDTAAIGNRVRVQGTVIEYVPTADPTQPPLTEIGGVLTVLLDSTGNA 427

Query: 300 GEVPVAAPFYVAEGETLAQALERFEGMNVL-----LDAGSDLKINRTFSYDYAGKRNNML 354
              PV     +         LE  EGM V      ++A +   +N T +   +    + +
Sbjct: 428 LPEPVLLSAALPNPNGAFDQLEALEGMRVAAPSLTVNAPTGGNVNETTATATSNGVFHAV 487

Query: 355 VS-----YKAPLMKPTQLYPALSAEATALAKSNRENQLFIESDYKPADGIIPYFPDFNAE 409
           VS     ++ P ++     PA S        +N E              I        AE
Sbjct: 488 VSELPRAFREPGVQLPDPLPAGSPAGVPRWNTNPEV-------------IAVGSAGVGAE 534

Query: 410 TGYIRVGDQLTNLQGVVGYSYGAYRLVATNTITAGDFIRGDDRTDAPSVATKGDIRVASF 469
              +  G ++ N+ G + YS+  Y L    T        G D+          D+ VA++
Sbjct: 535 RLDLAAGCRVFNVVGPLDYSFRRYTLYPERTPQVS--CNGADQPRPAPRPQADDVAVATY 592

Query: 470 NVLNFFNDVVGGDTNPSGGNRGALTEEEMLLQRTKIVSAITAM--NADIVGLMEIANNGF 527
           N+  FF+D      +P+ G    LT      +  K   AI       DI+G +E+ N   
Sbjct: 593 NMERFFDD----QNDPAIGEP-VLTPAAFQARLNKASLAIRNYLHTPDILGTVEVENISV 647

Query: 528 GEKSAIKNLVDALNEKQTTENAYSYIQIADTDKYDGKYFGSDAITVGMLYRAGKVSLAGA 587
            +  A +   DA+   Q      +Y+Q       +G   G   I VG L +   VS  G 
Sbjct: 648 LQTLAARINADAVAAGQQDPKYVAYLQ-------EGNDVGG--IDVGFLVKTADVS--GG 696

Query: 588 ARTIETPEQHASVGSVTRIKDGKTETNPGNDAY---QRHSLAQTFKIHDQN-----LTVV 639
              +E       V SV +     T T PG        R  L  + ++H  +     LT +
Sbjct: 697 VPRVE-------VVSVAQEGKATTWTEPGGAVSLLNDRPPLVLSTRVHQADGRVLPLTTI 749

Query: 640 VNHLKSKNSGCLEDWVNFEESVDPADLQGRCNEFRVSAAKVLGEALK-----DVKGDLLV 694
           V H +S N           E+ D A  + R    R + A  L   L+     D    +LV
Sbjct: 750 VVHQRSLNGA---------ETDDAAGTRIRAK--RQAQASYLARLLQARQQLDPAERVLV 798

Query: 695 IGDMNAY----GMEDPLRVLTDFDASKSDRDIMTASWTTLNGKVYERQGSKIDKGY-GLI 749
           +GD NA+    G  D +  +T   A+ +         T ++G   +     +D  Y  L 
Sbjct: 799 MGDFNAFEFNDGYVDAMGTVTGKPAADAQ--------TVVSGDGIDL----VDPDYTDLT 846

Query: 750 NLNTKAHGTGTYSYSYNGELGNLDHALANTSLAKRLVDIEDWHINSVESSLFEFGKKFSG 809
             NT      +YSY+++G + +LDH LAN +L +        +I S+          F G
Sbjct: 847 WFNTPDQ---SYSYAFDGNVQSLDHILANDALMRAS------NIASLSVGHARINADFPG 897

Query: 810 NLVKSENA-FSASDHDPVIVAL 830
                 N     SDHDP +V L
Sbjct: 898 TARNDANTPTRLSDHDPTVVLL 919



 Score = 34.3 bits (77), Expect = 5e-05
 Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 16/141 (11%)

Query: 9   AVSLAVAAALPMMANANVMITEYVEGSSNNKA------IELYNSGNTAIDLTGYKLVRYK 62
           A     A A    A+A V+I++   G  N+ A      IEL+N+G T + L G+  V+Y 
Sbjct: 8   AALFVCALAFAGHASAEVVISQVYGGGGNSGATLRSDFIELHNTGTTTVSLDGWS-VQYA 66

Query: 63  DGATDAADMQVLDGQSIAP--KATKVILNSSGVITLPQGVDSFSGTLSFNGGDAVALVKD 120
             A  +     L G   A      K    S G + LP      +GTL+ +G      +++
Sbjct: 67  SAAGSSWQTTPLAGTVPAGGYYLIKQADGSGGSVALP--TPDATGTLAMSGTAGKVALRN 124

Query: 121 GAVVDIIGDVPTP----VGWG 137
                + G  PT     VG+G
Sbjct: 125 STAA-LSGTCPTEYADLVGYG 144