Pairwise Alignments

Query, 871 a.a., extracellular nuclease (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 606 a.a., Nuclease from Xanthomonas campestris pv. campestris strain 8004

 Score =  144 bits (363), Expect = 2e-38
 Identities = 176/657 (26%), Positives = 264/657 (40%), Gaps = 117/657 (17%)

Query: 187 CSGAKIVP----IYQVQGAGESSPYVPAGAFESESEVTVRGVVTARGENLFKGFYLQEVK 242
           C  A+  P    I  VQG    SP+           V V G+VTA       G ++Q+  
Sbjct: 54  CRAAEGAPQRLTIADVQGEDTRSPF-------DGRLVEVEGIVTADTRLGLAGLFVQQP- 105

Query: 243 GDNSPYTSDGVFVF-LGEAPPPAIQPGVEICVQGKVKEYFGLTQIDIKTDKKFEAGTKGE 301
               P  S GVFV   GEA    +  G  + + G V+E        + T    +A T   
Sbjct: 106 -GTEPRRSHGVFVTGAGEAQ---VAVGDRVRIVGTVREVGAGGDASLTT---LQATTLEV 158

Query: 302 VPVAAPFYVAEGETLAQALERFEGMNVLLDAGSDLKINRTFSYDYAGKRNNMLVSYKAPL 361
           +    P  V          E  EG +V L A   + +N +   D       ++ ++   L
Sbjct: 159 LASNQPVPVRMLSGPPANWEALEGEHVRLAA---VTLNGS---DRLASNGELIAAFGGRL 212

Query: 362 MKPTQLYPALSAEATALAKSNRENQLFIESDYKPADGIIPYFPDFNAETGYIRVGDQLTN 421
            +P+++  A +         N   ++ ++      +G  P    +      +RVG  L  
Sbjct: 213 WQPSEVAAAGTPAFAQTEADNARRRVLLDD---ARNGRTPKAVSYLPAEANLRVGSLLRQ 269

Query: 422 LQGVVGYSY-GAYRLVATNTITAGDFIRGDDRTDAPSVATKGDIRVASFNVLNFFNDVVG 480
           + G+V   Y G YR+     +T    +       AP V   GD+R+ASFN+ NFFN    
Sbjct: 270 VDGIVDQRYDGQYRIQVLAPLT----LPALPAPVAPQVG--GDLRIASFNLENFFNGNGR 323

Query: 481 GDTNPSGGNRGALTEEEMLLQRTKIVSAITAMNADIVGLMEIANNGFGEKSAIKNLVDAL 540
           G   P+   RGA T E+   Q  K+V+ I  + AD+  LME+ N+G    +A+  LV AL
Sbjct: 324 GGGFPT--KRGARTHEQFQAQLAKLVATIVPLQADVAALMELENDGNDGDTAVAQLVAAL 381

Query: 541 NEKQTTENAYSYIQIADTDKYDGKYFGSDAITVGMLYRAGKVSLAGAARTIETPEQHASV 600
           N     ++ + ++         G   G DAI VG++YR+ +V+  G   T+         
Sbjct: 382 NAAGKDKD-WRFVD-------SGSGPGDDAIRVGIVYRSTQVTPVGKPATL--------- 424

Query: 601 GSVTRIKDGKTETNPGNDAYQRHSLAQTFKI-HDQNLTVVVNHLKSKNSGCLEDWVNFEE 659
                       T    D++ R  LAQ F+        VV NH KSK  G          
Sbjct: 425 ------------TGGPFDSHSRVPLAQAFRSSRGATFVVVANHFKSKGCGNASG-----A 467

Query: 660 SVDPADLQGRCNEFRVSAAKVLGEALK-DVKGD----LLVIGDMNAYGMEDPLRVLTDFD 714
             D  D Q   N  R  +AK L + L+ D  G      +++GD NAY ME P+R L    
Sbjct: 468 DADQHDGQACWNATRTESAKRLHQWLQSDPTGAQTKLAVLLGDFNAYAMETPMRSLR--- 524

Query: 715 ASKSDRDIMTASWTTLNGKVYERQGSKIDKGYGLINLNTKAHGTGTYSYSYNGELGNLDH 774
                     + W      V  +Q                      YSY Y+G  G LDH
Sbjct: 525 ---------ASGWQDAFAVVGVKQ---------------------PYSYVYDGMSGRLDH 554

Query: 775 ALANTSLAKRLVDIEDWHINSVESSLFEFGKKFSGNLVKSENAFSASDHDPVIVALS 831
           AL + ++AK+L    +WHIN+       + K+   NL      + +SDHDPV++  +
Sbjct: 555 ALLSPAMAKQLRGAAEWHINADAMDDAGYAKR---NL---PGPWRSSDHDPVLLGFA 605