Pairwise Alignments

Query, 871 a.a., extracellular nuclease (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 869 a.a., nuclease from Vibrio cholerae E7946 ATCC 55056

 Score =  565 bits (1457), Expect = e-165
 Identities = 358/902 (39%), Positives = 508/902 (56%), Gaps = 67/902 (7%)

Query: 1   MENVNKLTAVSLAVAAALPMMAN--ANVMITEYVEGSSNNKAIELYNSGNTAIDLTGYKL 58
           M     LT  +LA+A +  ++A   A+++I++YVEGSS NKAIE+ N+ +  + L GY+L
Sbjct: 3   MRTTPNLTRSTLALAISFGLVAPSYADLLISQYVEGSSFNKAIEIANTSDQTVSLNGYQL 62

Query: 59  VRYKDGATDAADMQVLDGQSIAPKATKVILNSSGVITLPQGVDSFSGTL-SFNGGDAVAL 117
               +G+        LDGQ IA +   VI + S    +    D  + T+ +FNG D +AL
Sbjct: 63  AMSTNGSGTWDKTLPLDGQVIAARDVLVIAHGSANSAILATADLTNNTVVNFNGNDPIAL 122

Query: 118 VK-DGAVVDIIGDVPTPVGWGLDVTLKRKLDSLVANTVFNPAQWEQLPKDTFTGLGSLDT 176
           +  DG+V D++G +     +  D TL R   +L  +  +  + W    KD   GLG+LDT
Sbjct: 123 LNSDGSVHDVVGSMGG-ADFAKDNTLART--TLTPSATYQASDWATQGKDNIDGLGALDT 179

Query: 177 PTKPETPAFSCS--GAK--IVPIYQVQGAGESSPYVPAGAFESESEVTVRGVVTARGENL 232
            T P   AF+C+  GA+     I Q+QG G +SPY+    + +  +  V+GVV+A    L
Sbjct: 180 TTPPS--AFNCTLDGAEPSFTTIQQIQGEGSTSPYIQGYPYITNEDFFVKGVVSAVTTGL 237

Query: 233 FKGFYLQEVKGDNSPYTSDGVFVFLGEAPPPAIQPGVEICVQGKVKEYFGLTQIDIKTDK 292
            KGFYLQ ++ D +P TS+G+FVF  ++    + PG  +CV+GKV+EY+ LTQ+  + ++
Sbjct: 238 TKGFYLQSLEDDYNPNTSEGLFVFTNQSSSD-LAPGDVVCVKGKVQEYYNLTQLKAENNQ 296

Query: 293 KFEAGTKGEVPVAAPFYVAEGETLAQALERFEGMNVLLDAGSDLKINRTFSYDYAGKRNN 352
             + G +      A   +   E  AQ LER+EGM V      D+++ RTF YDYA +RNN
Sbjct: 297 WVKQGQQAAPQAQAIEILPSDEHFAQTLERYEGMLVKTTPELDMRVTRTFGYDYASRRNN 356

Query: 353 MLVSYKAPLMKPTQLYPALSAEATALAKSNRENQLFIESDYKPADGIIPYFPDF------ 406
           M+++     M+P Q +PA S +A+     N + +LF+ESD K  DG IPY+P F      
Sbjct: 357 MVLAQGRINMQPNQQHPAGSEQASQQKLDNAQRRLFVESDAKAPDGQIPYYPTFGRTDVD 416

Query: 407 --NAETGYIRVGDQLTNLQGVVGYSYGAYRLVATNTITAGDFIRGDDRTDAPSVATKGDI 464
              +   YIR+ D ++ L+GVV YSY  YRL+ TNTI+A + +    R   P +  +GD+
Sbjct: 417 QDGSTEDYIRIDDTVSGLEGVVSYSYNEYRLIVTNTISAENLVHNAPRQAKPDL-DEGDL 475

Query: 465 RVASFNVLNFFNDVVGGDTNPSGGNRGALTEEEMLLQRTKIVSAITAMNADIVGLMEIAN 524
           R+A+FNVLN+FN   GGD N  G NRGA    E  +Q+ KIV+AI  ++ADIVGLMEI N
Sbjct: 476 RIATFNVLNYFNSPFGGDANQHGDNRGANNLAEFEVQQAKIVNAIVRLDADIVGLMEIEN 535

Query: 525 NGFGEKSAIKNLVDALNEKQTTENAYSYIQIADTDKYDGK-----YFGSDAITVGMLYRA 579
           NGFGE SAI  LV+ +N  Q  +    Y  +A     DGK       G+D IT G++YR 
Sbjct: 536 NGFGEGSAIAQLVNQIN-SQIADKKKHYRFVAIDSNGDGKTDAADSLGTDVITTGVIYRD 594

Query: 580 GKVSLAGAARTIETPEQHA-----SVGSVTRIKDGKTETNPGNDAYQRHSLAQTFKIH-- 632
             V LA   R I  P Q A     + G V  I+DGK         YQR +LA TFK+   
Sbjct: 595 KVVKLA-QNRVIPMPSQQAPEVVDANGKV--IEDGKN--------YQRDTLAPTFKVKGG 643

Query: 633 DQNLTVVVNHLKSKNSGCLEDWVNFEESVDPA---DLQGRCNEFRVSAAKVLGEALKDVK 689
           ++ +TV VNH KSK S C ED    E+        D QG C  FRV+AA  LG+AL  + 
Sbjct: 644 NEKITVAVNHFKSKGSACWEDAAPVEQGGQAGKDLDYQGACENFRVAAAVALGDALAKID 703

Query: 690 GDLLVIGDMNAYGMEDPLRVLTDFDASKSDRDIMTASWTTLNG-KVYERQGSKIDKGYGL 748
           G  +++GDMN+YGMEDP+ VLTD+   K  + I  A  T + G + +   G++I   YG 
Sbjct: 704 GHKVILGDMNSYGMEDPMLVLTDYTPEKYGKTIRAARNTYIAGLEQFGDAGAEIKHSYGY 763

Query: 749 INLNTKAHGTGTYSYSYNGELGNLDHALANTSLAKRLVDIEDWHINSVESSLFEFGKKFS 808
           +N     H   ++SYS+N E+G LDH L + SL  ++VD  DWHIN  ES+LF++  +F 
Sbjct: 764 LNAVAMKH-PDSWSYSFNDEVGALDHLLVSPSLKHKVVDATDWHINGAESTLFDYNDEFK 822

Query: 809 GNLVKSENAFSASDHDPVIVALSYPAPVVPPKPQPTPKDDGGALGYLGLALLSLLGLQRR 868
           GNL K ++ F ASDHDP ++ L+                 GG+LG   L  L  LG+ RR
Sbjct: 823 GNLPKYKDQFRASDHDPAVLELNI---------------YGGSLGLGALLGLLGLGVWRR 867

Query: 869 RR 870
           RR
Sbjct: 868 RR 869