Pairwise Alignments

Query, 871 a.a., extracellular nuclease (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 945 a.a., endonuclease/exonuclease/phosphatase (RefSeq) from Shewanella loihica PV-4

 Score =  371 bits (952), Expect = e-106
 Identities = 292/870 (33%), Positives = 427/870 (49%), Gaps = 119/870 (13%)

Query: 6   KLTAVSLAVAAALPMMANAN-VMITEYVEGSSNNKAIELYNSGNTAIDLTGYKLVRYKDG 64
           K +A++LA+         A+ ++I+EYVEGSSNNKA+E YN    AIDL+ Y+L  Y +G
Sbjct: 4   KASALALAIGGVSTFAQAADDLIISEYVEGSSNNKAVEFYNPTGAAIDLSQYQLEFYFNG 63

Query: 65  ATDAADMQVLDGQSIAPKATKVILNSSGVITLPQGVDSFSGTLSFNGGDAVALVKDGAVV 124
           +T A     L G S+A   T V+ ++     +    D  S    FNG D + L K G V+
Sbjct: 64  STSAGSTIALTG-SLAAGKTYVLADNDAAAEILAVADQLSTASFFNGDDTLVLRKQGQVI 122

Query: 125 DIIGDVPTPVG--WGL------DVTLKRKLDSLVANTVFNPA----QWEQLPKDTFTGLG 172
           D +G + T  G  WG       + TL+R  + L+A+T  + A     W    +D F+ LG
Sbjct: 123 DSLGQLGTDPGSEWGSGDLSTQNNTLRRDPNQLIADTQLDDAVTLATWTGHAQDDFSDLG 182

Query: 173 SL-----DTPTKPETPAFSCSGA----KIVPIYQVQGAGESSPYVPAGAFESESEVTVRG 223
                    PT P  P     G         I ++QG+G+ SP        +   V V  
Sbjct: 183 QFAGQGPTDPTDPTDPTEPPVGLVCHDPATKISELQGSGDISPL-------NGQSVMVEA 235

Query: 224 VVTARGENLFKGFYLQ--EVKGDNSPYTSDGVFVFLGEAPPPAIQPGVEICVQGKVKEYF 281
           +VT+  E   KG +LQ  + + D    TS+GVFV+ G +     Q G  + +   VKEY 
Sbjct: 236 IVTSNQEAGLKGLFLQMADAEADADINTSEGVFVYTGGSL--GYQAGDRVRLTAMVKEYN 293

Query: 282 GLTQIDIKTDKKFEAGTKGEVPVAAPFYVAEGETLAQA--LERFEGMNVLLDAGSDLKIN 339
           GLT++   ++      +   +P AA   +     LAQ+  LE  EGM V      +L +N
Sbjct: 294 GLTELTNVSEHAL-CDSAQALPSAAEVSLP----LAQSSDLEAVEGMRVHFT--QNLVVN 346

Query: 340 RTFSYDYAGKRNNMLVSYKAPLMKPTQLYPALSAEATALAKSNRENQLFIESDY--KPAD 397
             ++    G+   +L+  K   +      P   +EA A++++N  + + ++     +  D
Sbjct: 347 EVYNL---GRYGEILLGSKRHFIGTQVAEPG--SEALAVSQANALDSVLLDDGLTSQNPD 401

Query: 398 GIIPYFPDFNAETGYIRVGDQLTNLQGVVGYSYGAYRLVATNTITAGDFIRGDDRTDAPS 457
            +    P  +A+   +RVGD +T L  V+ Y +G YRL+  +T+   +F+  + R+  P+
Sbjct: 402 PVRYPAPGLSADNT-VRVGDSITELHAVMHYGFGKYRLMPIDTV---NFVATNPRSSEPA 457

Query: 458 VATKGDIRVASFNVLNFFNDVVGGDTNPSGGNRGALTEEEMLLQRTKIVSAITAMNADIV 517
           +A  G+++VASFNVLN+FN    G   P+  +RGA T  E   QR KI+SA+ +++ADI 
Sbjct: 458 LAAGGNLKVASFNVLNYFNGDGLGGGFPT--DRGADTPSEFARQRAKIISAMVSIDADIF 515

Query: 518 GLMEIANNGFGEKSAIKNLVDALNEKQTTENAYSYIQIADTDKYDGKYFGSDAITVGMLY 577
           GLMEI N+GFG +SAI +LV  LN+    E  Y +I             G+DAITVGMLY
Sbjct: 516 GLMEIENDGFGTESAINDLVSGLNQA-VGEARYQFISAPTPT------IGTDAITVGMLY 568

Query: 578 RAGKVSLAGAARTIETPEQHASVGSVTRIKDGKTETNPGNDAYQRHSLAQTFKI--HDQN 635
           R+ +V   GAA+ + +              DGK           R SL Q F++   DQ 
Sbjct: 569 RSDRVRPVGAAKVLSSANSPLDEQGEVLFNDGKN----------RPSLTQAFEVLVEDQQ 618

Query: 636 LTVVVNHLKSKNSGCLEDWVNFEESVDPADLQGRCNEFRVSAAKVLGEALKDVKGDL--L 693
           L V VNHLKSK S C+          D  D QG CN  R  AA  LG  L    G+L  L
Sbjct: 619 LVVAVNHLKSKGSDCVS-----LGDPDLNDGQGNCNLTRTRAATALGAWLASEYGELPTL 673

Query: 694 VIGDMNAYGMEDPLRVLTDFDASKSDRDIMTASWTTLNGKVYERQGSKIDKGYGLINLNT 753
           VIGDMNAY  EDP+  L                                 +G G + L  
Sbjct: 674 VIGDMNAYAKEDPIDAL---------------------------------RGAGYLELFD 700

Query: 754 KAHGTGTYSYSYNGELGNLDHALANTSLAKRLVDIEDWHINSVESSLFEFGKKFSG---- 809
               +G YSY ++GE G LDHALANT LA R+VD+ +WHIN+ E  L ++ ++F      
Sbjct: 701 HLGKSGAYSYVFSGETGQLDHALANTQLADRVVDVTEWHINTDEPRLLDYNEEFKSAGQI 760

Query: 810 NLVKSENAFSASDHDPVIVALSYPAPVVPP 839
             + S +A+ +SDHDPV+++L      + P
Sbjct: 761 ESLYSSDAYRSSDHDPVVISLLLERETIAP 790