Pairwise Alignments

Query, 466 a.a., TPR domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 472 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

 Score =  189 bits (479), Expect = 2e-52
 Identities = 142/474 (29%), Positives = 231/474 (48%), Gaps = 23/474 (4%)

Query: 1   MKTTFIHSFIRPTISTLMLAAILGSSGCAY---NSIFINYPAQIAPVKQELNTAKPMAEI 57
           M T  +  +I+  I +L L ++L  +GCA     ++F +Y AQ + + Q +   +     
Sbjct: 3   MVTNHVVQYIKRPIRSLTLTSLL-LAGCANLTAGNLFSHYSAQNSDLYQSVAAGQYQQAT 61

Query: 58  DKLASNIQGNDGLLYAQEAGRVAQVAGDFASSKKYYQQAVAAYTAFDDKAKISASDIGAT 117
             L   + G   +L   E GRV  ++  +A S++    A  A     D+A IS S    +
Sbjct: 62  QLLPDYVAGE--VLDNLEKGRVYFLSQQYAESQQSLAAADLAVKQQQDRAIISVSSTATS 119

Query: 118 ATSLVLNDNAIPYRGPGYERIMLHQYQALNYLFSGDYQGALVEVRRSNELQSSEQERYQK 177
             SL +NDN   Y    YE   LH Y  LNY+ + D  GALVE+RR+N++Q + ++R ++
Sbjct: 120 VGSLAVNDNLNEYEPADYELGFLHLYLGLNYVRNNDLDGALVEMRRANQVQEAAKKRREQ 179

Query: 178 SQKSV-QAMANGTIDAEVNR-LGQ--AAGTVTSSFLNAYSYYTTGVLHEVLGEPNDAFID 233
           +  S  Q M +  +   +   L Q   AG    +  N Y  Y + +L+E   + N A++D
Sbjct: 180 ALSSAEQEMRSQGLSPNLGSVLAQYPDAGKTLQAVQNGYLLYLSALLYEADNDLNSAYVD 239

Query: 234 YRKAAQITPDNTYLQQDLVRLAKQLGMPQ-YDEFKKRWGDAKLPKAGEGQVILMVEKGFV 292
           YR+A  + P+N  +    +R+A +LGM Q     K+++G+ K   + +G+VI++ E+G V
Sbjct: 240 YRRALAVAPNNPSVIDGTLRVASRLGMQQDLKLLKQQYGEPKRLTSAQGRVIVIEEQGIV 299

Query: 293 PEKQA--LTVPFT-IHGNWQTVSLA-TYGPNNSYVPETQVQGLGTVLKTEPIANIDALAI 348
             KQA  L++P +   GN    SLA  Y  ++       +   G  L + P+ ++D +A 
Sbjct: 300 QPKQAWRLSLPLSDSRGNTALYSLALPYYSSSVAQSRVPISLNGASLASMPVTDVDLMAK 359

Query: 349 TALKEDLPGTLVRQVARVYAKSEMAYQVEKSGKPGNNAADIGSIAMQIFNVVTEQADRRS 408
            AL E +P  ++RQ  RV AK ++        K      D+ ++   I+N +TEQ D RS
Sbjct: 360 QALTEQMPALVLRQALRVVAKDQLR-------KETTQEEDVANLVFNIWNTLTEQPDTRS 412

Query: 409 WLTLPKQAQIGRRYLNPGEYTLQLDKAPPAKIEVAAGKTTLVWAIDTGNYTRIY 462
           WLTLP       + +  G+  L +         V    T LVW    GN   I+
Sbjct: 413 WLTLPATVNTATQVVKAGDQVLDI-AGTHYTFHVPENGTVLVWLSHQGNNVTIW 465