Pairwise Alignments

Query, 380 a.a., iron-compound ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 316 a.a., iron ABC transporter permease from Methanococcus maripaludis S2

 Score =  147 bits (370), Expect = 5e-40
 Identities = 101/333 (30%), Positives = 174/333 (52%), Gaps = 39/333 (11%)

Query: 52  VFNVFIDKFSQLFMGENAPSTAAMTDRIVMELRLPRILLAFVAGAGLSLAGSVLQTVTRN 111
           +F++F+ ++       +   T ++ + I  ++RLPR +   +AGA L+LAG   Q + +N
Sbjct: 16  LFSLFVGRY---MFDPSLIFTNSLANNIFFDIRLPRAIAVSLAGASLALAGVSFQNIFKN 72

Query: 112 PLADPYLFGISSGASFGAVVMLTLFSGSGFFANAGVIANSGIFSGAEILAGLQWFSLPFG 171
            LA P + G++SG++FGA + +  F+ + +                          + F 
Sbjct: 73  YLAGPNILGVTSGSAFGASIAILFFAYNPYL-------------------------VQFS 107

Query: 172 AFIGASLSVLIVLALSGLGLNSQVERMLLSGVATSFMFGALTSLLLYFASP-QATASVLF 230
           AFI   ++V I   LS L L S +  ++LSG+A S  F A+  L+ Y A P +   +++F
Sbjct: 108 AFIFGVIAVYIAYKLSSL-LKSGIVGLILSGMAISAFFSAMIGLIKYVADPYEKLPTIVF 166

Query: 231 WSLGSFAKASW---SLLILPTIVVLVSFFIILGWKRQIMALQAGDETAHTLGVNVPKLRL 287
           W LGSF    W    + ++P ++ ++   ++L W   I+A   GDE A +LGV+  KL+ 
Sbjct: 167 WLLGSFVGLRWVDLGISVIPMLIGIIG-LVMLKWVFNILA--TGDENAKSLGVDSKKLKN 223

Query: 288 NMLLLCSLITAILVATCGGIGFVGLMIPHTVRLL--FPGRQPILLTALVGGLFMVWIDVL 345
             + L +L  +   +  G I +VG++ PH  RLL     R+ +  +A VG   ++  D L
Sbjct: 224 ITIFLATLAASASTSLAGMIQWVGVVSPHIARLLVGVDNRKLVPASAFVGATLLLLCDTL 283

Query: 346 ARCLLGNQELPVGIITASIGSFFFLLILRRRKV 378
           AR L  + E+P+ IIT+ IG+   ++IL +R V
Sbjct: 284 ARTLTPS-EIPISIITSFIGAPILIIILSKRGV 315