Pairwise Alignments

Query, 310 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 301 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  226 bits (575), Expect = 7e-64
 Identities = 131/299 (43%), Positives = 172/299 (57%), Gaps = 17/299 (5%)

Query: 1   MLNQQWLATFVTLVEVGHFTHTANKLFMTQPGVSQHIKKLEEQVGVHLLLRKGKRFELTE 60
           MLN  WL TF TLV+ GHFT TA KLFMTQPGVSQHI+KLEE     L+ R  K FELT+
Sbjct: 1   MLNPIWLQTFKTLVDTGHFTKTAEKLFMTQPGVSQHIRKLEEACQHPLIHRINKSFELTD 60

Query: 61  AGAILYQHARQYQLAETELLARLQTDNTYVGECRFGCSGAIASLLYPHFLERQIQYPELC 120
            G ++Y++A Q    E  LL ++     + G  R  CSG+++ ++YP  L  Q  +P+LC
Sbjct: 61  QGRMVYEYATQLAKNERRLLEQIHETEPFAGRYRIACSGSLSLVIYPPLLALQQLHPKLC 120

Query: 121 VKIEAAPNQRIVSGILTNQLDMGIVTKRGEEADLTYQALGYAELSLVLPSQYLV--DKIG 178
           +++EAAPN  I+  I    +D+GIVT +  +     + LG   L LVLP  +    D++ 
Sbjct: 121 IELEAAPNHTILKAIKEGDVDVGIVTSQPSQGVFESEVLGEEPLYLVLPHDHPTEPDQLA 180

Query: 179 IELLEQIGFIDHPDGDYYLQQVLQANFGGRAPMVNSRTGSPVKAHTMAFTHHIRRTGYVN 238
             LL Q+G I HPD D+Y    L  +      ++NS +                R+GYVN
Sbjct: 181 DHLL-QLGLIGHPDIDHYFSLYLAKSTNLTLTVLNSES--------------FPRSGYVN 225

Query: 239 QLSQILLPVAKGLGFTVLPLSTVNAFMPRESLWAVDLEQKVQESLYLVHKSTRPLPSRF 297
           Q+ QILLPVAKGLGFTVLP S V  F  RE +   +    V E+LYLV K  R LP RF
Sbjct: 226 QIQQILLPVAKGLGFTVLPKSAVENFPLREQISVFENPAPVTETLYLVKKRQRDLPQRF 284