Pairwise Alignments

Query, 310 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 304 a.a., LysR substrate-binding domain-containing protein from Rhodopseudomonas palustris CGA009

 Score = 74.3 bits (181), Expect = 3e-18
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 17/203 (8%)

Query: 2   LNQQWLATFVTLVEVGHFTHTANKLFMTQPGVSQHIKKLEEQVGVHLLLRKGKRFELTEA 61
           L+ + L TF+ LV+ G F+ T+ +L  TQP VS  + +LEE  G  L  + G++  LT  
Sbjct: 5   LDLRLLQTFIVLVQTGSFSETSRRLGRTQPAVSLQLNRLEEATGAPLFTKVGRKLVLTNH 64

Query: 62  GAILYQHARQYQLAETELLARLQTDNTYVGECRFGCSGAIASLLYPHFL-ERQIQYPELC 120
           G ++  +AR     + EL ARL       G    G     A+ L P  L + +  YP + 
Sbjct: 65  GELVLGYARTIMGLQDELRARLAAPK-LDGVVVLGMPDLYAAYLLPGILADFRSAYPNVD 123

Query: 121 VKIEAAPNQRIVSGILTNQLDMGIVT-----KRGE---EADLTYQALGYAELSL------ 166
           V+++ A + ++++ +   ++D+ IVT     K GE   + +L + A   + + L      
Sbjct: 124 VELKCALSSKLMASVERAEIDLAIVTGMPAFKVGELVAQEELVWVASERSSVHLENPVPL 183

Query: 167 -VLPSQYLVDKIGIELLEQIGFI 188
            +LP   +    G+  LE IG I
Sbjct: 184 AMLPPGNIFRDFGLAALESIGRI 206