Pairwise Alignments

Query, 310 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 290 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  196 bits (497), Expect = 7e-55
 Identities = 115/309 (37%), Positives = 170/309 (55%), Gaps = 19/309 (6%)

Query: 1   MLNQQWLATFVTLVEVGHFTHTANKLFMTQPGVSQHIKKLEEQVGVHLLLRKGKRFELTE 60
           M+N  WL +F TLVE+GHFT TA +L+MTQ GVSQH++KLEEQ+   LLLR+GK+F LT 
Sbjct: 1   MMNPIWLRSFCTLVELGHFTRTAERLYMTQSGVSQHVRKLEEQLDTQLLLREGKKFSLTH 60

Query: 61  AGAILYQHARQYQLAETELLARLQTDNTYVGECRFGCSGAIASLLYPHFLERQIQYPELC 120
           AG  LYQ  +    +  +L   ++ D  + GE R    G++   LY   LE Q  +PEL 
Sbjct: 61  AGRQLYQQGQAILQSLAQLEQGIKQDPPFAGEVRLMSPGSVGLKLYGELLELQCAHPELS 120

Query: 121 VKIEAAPNQRIVSGILTNQLDMGIVTKRGEEADLTYQALGYAELSLVLPSQYLVDKIGIE 180
           +    A N  + S I   + D+G++T++ E +++  +A+    L LV P+      +  E
Sbjct: 121 LDYRFASNAGVESAIAAMEADIGLMTRQPELSEVQAEAIAEEPLLLVTPASQ--TSLSWE 178

Query: 181 LLEQIGFIDHPDGDYYLQQVLQANFGGRAPMVNSRTGSPVKAHTMAFTHHIRRTGYVNQL 240
            L Q+GFIDHPDG ++ + +L AN+             P   H    +  +   G+ NQ+
Sbjct: 179 ALLQLGFIDHPDGAHHAKLLLGANY-------------PEFEH----SDQLPNRGFSNQI 221

Query: 241 SQILLPVAKGLGFTVLPLSTVNAFMPRESLWAVDLEQKVQESLYLVHKSTRPLPSRFDAF 300
             IL PV++GLGF+VLP   V AF  ++ + A  L   V E++YL  +    LP R D+ 
Sbjct: 222 GLILEPVSRGLGFSVLPAYAVEAFARQDKITAHRLPVAVSETIYLCRRRQAVLPRRVDSL 281

Query: 301 IEMAARLIA 309
            E     +A
Sbjct: 282 SEAIKACLA 290