Pairwise Alignments

Query, 405 a.a., NADH:ubiquinone oxidoreductase, Na translocating, beta subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 360 a.a., CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase from Herbaspirillum seropedicae SmR1

 Score = 72.4 bits (176), Expect = 2e-17
 Identities = 46/177 (25%), Positives = 88/177 (49%), Gaps = 14/177 (7%)

Query: 209 RAYSMANYPDEKGRIM-LNVRIATPPSANVPPGKMSSYIFN-LKAGDKVTISGPFGEFFV 266
           R+YSMA Y  +   ++ L+VR       ++P G  +  +FN ++ G + ++ GP G FF+
Sbjct: 167 RSYSMATYAKDGSDLLELHVR-------HLPGGLFTDRLFNGMQPGQQFSLEGPAGSFFM 219

Query: 267 KDTDAEMVFIGGGAGMAPMRSHIFDQLKSKKTKRKMSFWYGARSTREVFYQQDFDTLAAE 326
           ++    ++ +  G G AP+++ + + + S  T R M  ++G R   +++        AA 
Sbjct: 220 REGTQPLILLASGTGFAPVKALVEEAIASGST-RAMRLYWGGRRAADLYLDALCRDWAAS 278

Query: 327 NDNFVWHVALSEPLPEDNWTGYTGFIHNVLYENYLKNHKAPEDCEFYMCGPPIMNSS 383
              F +   LSE      W+G TG +H  +    +++  A +  + Y CG P++  S
Sbjct: 279 LPWFDYVPVLSEADATSGWSGRTGLVHRAV----MQDVPAMQQYQVYACGAPVVVES 331