Pairwise Alignments

Query, 405 a.a., NADH:ubiquinone oxidoreductase, Na translocating, beta subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 340 a.a., NADH oxidase from Burkholderia phytofirmans PsJN

 Score = 96.3 bits (238), Expect = 1e-24
 Identities = 84/379 (22%), Positives = 157/379 (41%), Gaps = 62/379 (16%)

Query: 34  ITIGINDDAEKSIKVAAGDKLLGALASKNIFIPSACGGGGTCGQCRVKVKSGGGDILPTE 93
           I +   D   + +   AG+K+L A     I +P  C  G  CG C+ + +SG  D+    
Sbjct: 6   IALNFEDGVTRFVTCKAGEKVLDAAFRAKINLPMDCSDG-VCGTCKCRAESGSYDLGDDY 64

Query: 94  LGHITKKEAKE-GCRLACQVAVKTDMELELEEEIFGVKKWQCEVISNDNKATFIKELLLK 152
           +     ++ KE G  L CQ+  ++D  + +       K  Q +  +   K     +  + 
Sbjct: 65  IEDALSEDEKESGLVLTCQMVPESDCVIAVPASSTACKTEQSKFAATVTKVEAHNDAAIV 124

Query: 153 LPEGEDVHFKAGGYIQIEAPAHVV---KYADFDIPAKYRDDWEKYGLFDLVSTVNEDVLR 209
           L             + +EA A V    +Y + D+P   +                    R
Sbjct: 125 LE------------LDVEAAAPVFLPGQYVNIDVPGSGQH-------------------R 153

Query: 210 AYSMANYPDEKGRIMLNVRIATPPSANVPPGKMSSYIFNLKAGDKVTISGPFGEFFVKDT 269
           +YS ++ P E     L  +I+         G MS+++ + +AG+KV ++GP G F+++  
Sbjct: 154 SYSFSSAPGESKISFLIKKISG--------GVMSTWLESAQAGNKVELTGPLGSFYLRAV 205

Query: 270 DAEMVFIGGGAGMAPMRSHIFDQLKSKKTKRKMSFWYGARSTREVFYQQDFDTLAAENDN 329
           +  ++F+ GG G+AP  S + + L    +++K+   YG     ++      +   A+  N
Sbjct: 206 ERPLLFLAGGTGLAPFLS-MLEVLARTNSQQKVHLIYGVTRDLDLVQVDAIEAYVAKLPN 264

Query: 330 FVWHVALSEPLPEDNWTGYTGFIHNVLYENYLKNHKAPE-----DCEFYMCGPPIMNSSV 384
           F +   +++          T   H    + ++  H   E     D + Y+CGPP M  +V
Sbjct: 265 FTYSTVVAD----------TESTHP--RKGWVTQHMPAEAVNDGDVDVYLCGPPPMVDAV 312

Query: 385 IKMLESLGVEPENILLDDF 403
            K  +  GV+P +   + F
Sbjct: 313 RKHFDDNGVKPNSFHYEKF 331