Pairwise Alignments

Query, 202 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 210 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit D from Vibrio cholerae E7946 ATCC 55056

 Score = 51.6 bits (122), Expect = 1e-11
 Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 17/159 (10%)

Query: 9   IQATFLDNMALSF-FLGMCTFLAVSKKVSTAFGLGVAVIVVMTLAVPLNQLIYAKVLAPG 67
           + A  LDN  ++   LG+C+ LAV+ K+ TAF + +AV+ V  L+     LI   +  P 
Sbjct: 11  VLAPVLDNNPIALQVLGVCSALAVTTKLETAFVMTLAVMFVTALSNFFVSLIRNHI--PN 68

Query: 68  ALAWAGMPGIDLSYLQLITFIGVIAALVQILEMFLDKYIPSLYDSLGIFLPLLTVNCAIF 127
           ++             ++I  + +IA+LV +++  L  Y+  +   L +F+ L+  NC + 
Sbjct: 69  SV-------------RIIVQMAIIASLVIVVDQILKAYLYDISKQLSVFVGLIITNCIVM 115

Query: 128 AGVIFMANRDYNFAESAVFAMGSGTGWALAIVMLAGLRE 166
                 A +      S +  +G+G G+   ++ +   RE
Sbjct: 116 GRAEAFAMKSEPI-PSFIDGIGNGLGYGFVLMTVGFFRE 153