Pairwise Alignments

Query, 202 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 223 a.a., NADH:quinone oxidoreductase subunit RnfE (Shelley Haveman) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 75.1 bits (183), Expect = 9e-19
 Identities = 59/197 (29%), Positives = 93/197 (47%), Gaps = 27/197 (13%)

Query: 1   MEHYINLFIQATFLDNMALSFFLGMCTFLAVSKKVSTAFGLGVAVIVVMTLAVPLNQLIY 60
           M+  I  F +  + +       LG+C  LAV+K  S   G+G+AVI V+ L+   N +I 
Sbjct: 1   MQQIIKEFTKGLWQELPPFRLVLGLCPTLAVTKTASNGLGMGLAVIFVLALS---NMII- 56

Query: 61  AKVLAPGALAWAGMPGIDLSYLQLITFIGVIAALVQILEMFLDKYIPSLYDSLGIFLPLL 120
                      + +  I    +++  FI + A+LV  +E+ +  Y   LY  LGIF+PL+
Sbjct: 57  -----------SMVRNIIPKKVRIACFIAISASLVVAVELLMQAYAYPLYQQLGIFVPLI 105

Query: 121 TVNCAIFAGVIFMANRDYNFAESAVFAMGSGTGWALAIVMLAGLRERMKFHAIPEGLQGI 180
            VNC I       A ++   + S    +G G G+ L++V L G+RE          L G 
Sbjct: 106 VVNCIILGRAEAFAAKN-PVSLSLADGLGIGLGFTLSLVFLGGIRE----------LFGT 154

Query: 181 GITFITTGLMALGFMSF 197
           G+ F  T +M  G+  F
Sbjct: 155 GMLF-GTQVMWQGYQPF 170