Pairwise Alignments

Query, 206 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 237 a.a., electron transport complex, RnfABCDGE type, E subunit from Pseudomonas stutzeri RCH2

 Score =  131 bits (329), Expect = 1e-35
 Identities = 77/207 (37%), Positives = 119/207 (57%), Gaps = 8/207 (3%)

Query: 6   SMRDMLAGPVFANNPVAMQVLGVCSALAVSNSMQTAVVMTLAVTFVLVFSNLIISAIRNF 65
           S R++    ++ NNP  +Q+LG+C  L VSNS   A+ + LA   VL  SN+ +S +R  
Sbjct: 5   SYRELTVNGLWKNNPALVQLLGLCPLLGVSNSAVNALGLGLATMLVLTCSNIGVSLVRGV 64

Query: 66  IPNSVRIIAQMTVIASLVIIVDMVLQDVAYELSKQLSVFVGLIITNCIIMGRAEAFAMKY 125
           +  +VR+ A + +IA+L   +++++Q   YEL + L +F+ LI TNC+I+GRA+ FA K+
Sbjct: 65  VNTAVRLPAFVMIIAALTTCIELLMQAFTYELYQILGIFIPLITTNCVILGRADGFAAKH 124

Query: 126 PPHLAVVDAVGNAAGYGLVLISVAFVRELLGTGNLFG--HSVLTTVENGGWYLPNEMFK- 182
            P +A  D V    G+ LVL+ +  +REL GTG LF   H +   + N         +K 
Sbjct: 125 NPLIAGFDGVVMGIGFCLVLVVLGGLRELFGTGALFANMHLLFGPIANDWQITLFNDYKG 184

Query: 183 -----LPPSAFFLIGLLIWSINVIQRK 204
                LPP AF ++GLLI   N I ++
Sbjct: 185 FLLAILPPGAFIVLGLLIALKNRIDQQ 211