Pairwise Alignments

Query, 206 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 222 a.a., NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit from Pseudomonas stutzeri RCH2

 Score =  247 bits (630), Expect = 1e-70
 Identities = 116/200 (58%), Positives = 158/200 (79%)

Query: 6   SMRDMLAGPVFANNPVAMQVLGVCSALAVSNSMQTAVVMTLAVTFVLVFSNLIISAIRNF 65
           +++++L  P+F NNP+ +Q+LG+CSALAV++++ TA+VM++A+T V+ FSNL IS IR+ 
Sbjct: 5   TVKEVLLNPIFNNNPIGLQILGICSALAVTSNLNTALVMSVALTLVVAFSNLFISMIRSQ 64

Query: 66  IPNSVRIIAQMTVIASLVIIVDMVLQDVAYELSKQLSVFVGLIITNCIIMGRAEAFAMKY 125
           IPNS+R+I QM +IASLVI+VD VL+  A+ LSKQLSVFVGLIITNCI+MGRAEAFAM+ 
Sbjct: 65  IPNSIRMIVQMVIIASLVILVDQVLKAYAFSLSKQLSVFVGLIITNCIVMGRAEAFAMQN 124

Query: 126 PPHLAVVDAVGNAAGYGLVLISVAFVRELLGTGNLFGHSVLTTVENGGWYLPNEMFKLPP 185
           PP L+  D +GN  GY  +LI++ F+REL G G L G+++L  V +GGWY PN M  LPP
Sbjct: 125 PPLLSFFDGIGNGLGYSAMLIALGFIRELTGAGKLMGYTILPLVNDGGWYQPNGMMLLPP 184

Query: 186 SAFFLIGLLIWSINVIQRKR 205
           SAFFLIGL IW I   ++++
Sbjct: 185 SAFFLIGLFIWGIRAWKKEQ 204