Pairwise Alignments

Query, 206 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 198 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit E from Vibrio cholerae E7946 ATCC 55056

 Score = 60.8 bits (146), Expect = 2e-14
 Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 12/156 (7%)

Query: 10  MLAGPVFANNPVAMQVLGVCSALAVSNSMQTAVVMTLAVTFVLVFSNLIISAIRNFI--P 67
           +L   +F  N      LG+C+ LAVS  ++T+  + +AV  VL  S  + + + N +  P
Sbjct: 7   LLVKSIFIENMALSFFLGMCTFLAVSKKVKTSFGLGIAVIVVLTISVPVNNLVYNLVLKP 66

Query: 68  NSV---------RIIAQMTVIASLVIIVDMVLQDVAYELSKQLSVFVGLIITNCIIMGRA 118
           +++           I  + VIA+LV I++M+L      L   L +F+ LI  NC I G  
Sbjct: 67  DALVEGVDLSFLNFITFIGVIAALVQILEMILDRFFPPLYNALGIFLPLITVNCAIFGGV 126

Query: 119 EAFAMK-YPPHLAVVDAVGNAAGYGLVLISVAFVRE 153
                + Y    +VV   G+  G+ L ++++A +RE
Sbjct: 127 SFMVQRDYSFAESVVYGFGSGVGWMLAIVALAGIRE 162