Pairwise Alignments

Query, 206 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 221 a.a., Na(+)-translocating NADH-quinone reductase subunit D from Marinobacter adhaerens HP15

 Score =  243 bits (621), Expect = 1e-69
 Identities = 119/193 (61%), Positives = 148/193 (76%)

Query: 6   SMRDMLAGPVFANNPVAMQVLGVCSALAVSNSMQTAVVMTLAVTFVLVFSNLIISAIRNF 65
           S + +L  P+F+NNP+A+Q+LG+CSALAV+ SM   +VM  AV  V  FSNL +S +R  
Sbjct: 5   SAKQVLFEPIFSNNPIALQILGICSALAVTTSMNVTLVMCAAVIAVTAFSNLAVSLVRTQ 64

Query: 66  IPNSVRIIAQMTVIASLVIIVDMVLQDVAYELSKQLSVFVGLIITNCIIMGRAEAFAMKY 125
           IP S+RII QMT+IASLVI+VD VL+  AYE+SKQLSVFVGLIITNCI+MGRAE FAMK 
Sbjct: 65  IPGSIRIIVQMTIIASLVIVVDQVLKAYAYEISKQLSVFVGLIITNCIVMGRAEGFAMKN 124

Query: 126 PPHLAVVDAVGNAAGYGLVLISVAFVRELLGTGNLFGHSVLTTVENGGWYLPNEMFKLPP 185
            P L+ +D VGN  GY ++LI VAF RELLG G+LFG S++  V  GGWY+PN +  LPP
Sbjct: 125 GPWLSFLDGVGNGLGYSVLLIFVAFFRELLGAGSLFGVSLMPVVNEGGWYIPNGLLLLPP 184

Query: 186 SAFFLIGLLIWSI 198
           SAFF+IGL IW +
Sbjct: 185 SAFFIIGLAIWGL 197