Pairwise Alignments

Query, 206 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 213 a.a., Na+-translocating NADH-quinone reductase subunit (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  185 bits (470), Expect = 5e-52
 Identities = 92/191 (48%), Positives = 136/191 (71%), Gaps = 3/191 (1%)

Query: 8   RDMLAGPVFANNPVAMQVLGVCSALAVSNSMQTAVVMTLAVTFVLVFSNLIISAIRNFIP 67
           +++ + P+  +NPV +QVLG+CSALAV+  ++ A+VM L+VT +  F+N++IS +R  IP
Sbjct: 10  KEVFSAPLGIDNPVTVQVLGICSALAVTAKLEPAIVMGLSVTVITAFANVVISLLRKTIP 69

Query: 68  NSVRIIAQMTVIASLVIIVDMVLQDVAYELSKQLSVFVGLIITNCIIMGRAEAFAMKYPP 127
           N +RII Q+ V+A+LV IV  +L+  AY++S QLSV+VGLIITNCI+MGR EAFAM+  P
Sbjct: 70  NRIRIIVQLVVVAALVTIVSEILKAFAYDVSVQLSVYVGLIITNCILMGRLEAFAMQNGP 129

Query: 128 HLAVVDAVGNAAGYGLVLISVAFVRELLGTGNLFGHSVLT--TVENGGWYLPNEMFKLPP 185
             + +D VGN  GY  +L+ VAF RELLG+G L G ++L    ++N G Y+ N +  +PP
Sbjct: 130 WESFLDGVGNGLGYAKILVIVAFFRELLGSGTLLGFNILNYEPIQNIG-YVNNGLMLMPP 188

Query: 186 SAFFLIGLLIW 196
            A  ++  +IW
Sbjct: 189 MALIIVACIIW 199