Pairwise Alignments

Query, 410 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 318 a.a., electron transport complex protein RnfD, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  110 bits (274), Expect = 8e-29
 Identities = 77/267 (28%), Positives = 131/267 (49%), Gaps = 19/267 (7%)

Query: 130 ALLTGLFWEVVFAKV--RHQELHE-GFFVTALLFTLILPVSIPLWLVVMGISFGVVIAKE 186
           A+ TG+  E +  +V  R  E+ +    V++LLF  +LP + P WLV++G++  + + K 
Sbjct: 58  AMATGVVVEALCQRVMGREPEVDDLTAVVSSLLFAFLLPANAPWWLVIVGVTLAISLGKM 117

Query: 187 LFGGMGYNFLNPALAGLAFIYFAYPSEVTTVKQLVAVDGFSGATALAQAAAGQLQFADYA 246
            FGG+G N +N AL G A ++ ++P         V +D    A  L       L    + 
Sbjct: 118 AFGGLGTNPINTALVGWAMLHVSWP---------VLMD--PNAMQLDTMLIDPLVRLKFF 166

Query: 247 WYSAFSDPNWWNNFFGFTVGAIGETSTLAVLLGGLLLLITRLADWRIVVGVMLGMIATAT 306
             +A  D +  +   G  +G +G   T A+ LGG  L       W I +   +G++A A 
Sbjct: 167 GAAAVHDISLTDLIMGNQIGGLGAAQTGALFLGGSYLAARGTIRWEISLSFFVGVVAVAA 226

Query: 307 LFNLIGSSTNQMMSMPWTWHLVTGGFAIAMMFMATDPVTTSYTRPGKFVYGALIGFMTVL 366
           +FN++    N  +     +HL+TG   +   F+AT+  ++   +    +YG + G + ++
Sbjct: 227 IFNIL----NPDLYATPVFHLLTGSTLLGGFFLATEGASSPGRQIPMMLYGLIGGALVII 282

Query: 367 IRVANPKMPEGVMLAILFANLWAPLFD 393
           IRV     P+GV  A++  NL APL D
Sbjct: 283 IRVYG-IYPDGVPFAVMLINLLAPLLD 308