Pairwise Alignments

Query, 456 a.a., NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 446 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit A from Vibrio cholerae E7946 ATCC 55056

 Score =  501 bits (1291), Expect = e-146
 Identities = 265/451 (58%), Positives = 321/451 (71%), Gaps = 7/451 (1%)

Query: 8   VITIKKGLDLPISGEPRQIIEPGNRPSQVALLGEEYVGLKPTMLVEVGDKVKKGQPLFED 67
           +ITIKKGLDLPI+G P Q+I  G    +VALLGEEYVG++PTM V VGD+VKK Q LFED
Sbjct: 1   MITIKKGLDLPIAGTPSQVISDGKAIKKVALLGEEYVGMRPTMHVRVGDEVKKAQILFED 60

Query: 68  KKTKGVFFTAPASGEIVAINRGERRVLQSVVIRCNGLDADEQIRFDIHA--DLQSLSAQV 125
           KK  GV FT+P SG++V INRG +RVLQSVVI   G   D+Q+ FD      L SL+   
Sbjct: 61  KKNPGVKFTSPVSGKVVEINRGAKRVLQSVVIEVAG---DDQVTFDKFEANQLASLNRDA 117

Query: 126 VQAQLVNSGLWTALRTRPFSRVPALDSKPAGIFVTAMDTNPLAADPRLIIAEQSDAFKAG 185
           ++ QLV SGLWTA RTRPFS+VPA+DS    IFVTAMDTNPLAA+P ++I EQS+AF AG
Sbjct: 118 IKTQLVESGLWTAFRTRPFSKVPAIDSTSEAIFVTAMDTNPLAAEPTVVINEQSEAFVAG 177

Query: 186 LAVLSHLTDGKVYLCQDKGEALVGADLPKVEVRRFTGVHPAGLAGTHIHFTLPVSIERQV 245
           L VLS LT GKVY+C+ KG +L  +  P VE   F G HPAGLAGTH+HF  PVS +   
Sbjct: 178 LDVLSALTTGKVYVCK-KGTSLPRSQQPNVEEHVFDGPHPAGLAGTHMHFLYPVSADHVA 236

Query: 246 WHIGYQDVIAYGKLFQTGELYTDRVVALGGPSVLNPRLLRTQLGAELSALVADEVKSGNN 305
           W I YQDVIA G+LF TGELYT RVV+L GP V  PRL+RT +GA L  LV  E+  G  
Sbjct: 237 WSINYQDVIAVGQLFLTGELYTQRVVSLAGPVVNKPRLVRTVMGASLEQLVDSEIMPGEV 296

Query: 306 RVVSGSVLSGHTAQGVHDFLGRFHNQISVLAEDAQHQVLPWVRGGSDKFSITRAVTSRLF 365
           R++SGSVLSG  A G H +LGR+H Q+SVL E    ++  W   G +KFS+TR+    LF
Sbjct: 297 RIISGSVLSGTKATGPHAYLGRYHLQVSVLREGRDKELFGWAMPGKNKFSVTRSFLGHLF 356

Query: 366 GLTKSFEFTTHQGGSQRAMMAFGQLDRVMPLDILPTLLVRDLVVRDTDEAQALGALELDE 425
              + +  TT   GS R+M+  G  ++VMPLD+ PTLL+RDL   D+D A  LGALELDE
Sbjct: 357 -KGQVYNMTTTTNGSDRSMVPIGNYEKVMPLDMEPTLLLRDLCAGDSDSAVRLGALELDE 415

Query: 426 EDLALCTFVCPGKYDFGKELRACLDVIEREG 456
           EDLALCTFVCPGKY++G+ LR CLD IE+EG
Sbjct: 416 EDLALCTFVCPGKYEYGQLLRECLDKIEKEG 446